View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_31 (Length: 251)
Name: NF10741_low_31
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 3122298 - 3122533
Alignment:
| Q |
1 |
tcaaatttcttttcttgtcatagcacaacaaggacgtaaacatgagacttgtgtgagggcacaaataactactagctattagctatataggaaaaatgat |
100 |
Q |
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| T |
3122298 |
tcaaatttcttttcttgtcatagcacaacaaggacgaaaacatgagacttgtgtgaaggcacaaataactactagctattagctatataggaaaaatgat |
3122397 |
T |
|
| Q |
101 |
gtacatagatgcaacataacatgttatcaaagctataannnnnnnnccattcctataaacaaagattgttttttcttaggcaannnnnnnatttctaatc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3122398 |
gtacatagatgcaacagaacatgttatcaaagctataattttttttccatccctataaacaaagattgttttttcttaggcaa-ttttttatttctaatc |
3122496 |
T |
|
| Q |
201 |
cattatcctcatattaagtgagtccaaaatcgtaatt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3122497 |
cattatcctcatattaagtgagtccaaaatcgtaatt |
3122533 |
T |
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