View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_32 (Length: 250)
Name: NF10741_low_32
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 35408885 - 35409114
Alignment:
| Q |
1 |
agtgttgtgcaaaatgtttgtgtgttccatctggaacttatggcaacaaacaagaatgtgatccgtgctataacaactggaaaactaaggaaggaaaacc |
100 |
Q |
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| T |
35408885 |
agtgttgtgcaaaatgtttgtgtgttccatctggaacttatggcaacaaacaagaatg---tccgtgctataacaactggaaaactaaggaaggaaaacc |
35408981 |
T |
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| Q |
101 |
aaagtgcccctaattcatgataattttttgctcccacacggctcgtttgtgagccgtgaggggttgcctctttcgnnnnnnncgtgtttactcctctgat |
200 |
Q |
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| T |
35408982 |
gaagtgcccctaattcatg---attttttgctcccacacggctcgtttgtgagccgtgaggggttgcctctttcgtttttttcgtgtttactcctctgat |
35409078 |
T |
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| Q |
201 |
ttggactcaagtattgcttgtgctcattgtatctcc |
236 |
Q |
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| T |
35409079 |
ttggactcaagtattgcttgtgctcattgtatctcc |
35409114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 20872111 - 20872007
Alignment:
| Q |
14 |
atgtttgtgtgttccatctggaacttatggcaacaaacaagaatgtgatccgtgctataacaactggaaaactaaggaaggaaaaccaaagtgcccctaa |
113 |
Q |
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| T |
20872111 |
atgtttgtgtgtcccatccggaacttatggtaacaaggaagagtgt---ccatgctataacaactggaaaactcaagaaggaaatccaaaatgcccctag |
20872015 |
T |
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| Q |
114 |
ttcatgat |
121 |
Q |
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| T |
20872014 |
ttgatgat |
20872007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 16095246 - 16095355
Alignment:
| Q |
3 |
tgttgtgcaaaatgtttgtgtgttccatctggaacttatggcaacaaacaagaatgtgatccgtgctataacaactggaaaactaaggaaggaaaaccaa |
102 |
Q |
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| T |
16095246 |
tgttgtgcaaagtgtttatgtgtcccatcgggaacatatggtaacaaggaagaatgt---ccatgctataataactggaaaaataagaaaggaggaccca |
16095342 |
T |
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| Q |
103 |
agtgcccctaatt |
115 |
Q |
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| T |
16095343 |
agtgcccctaatt |
16095355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 16005918 - 16005809
Alignment:
| Q |
3 |
tgttgtgcaaaatgtttgtgtgttccatctggaacttatggcaacaaacaagaatgtgatccgtgctataacaactggaaaactaaggaaggaaaaccaa |
102 |
Q |
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| T |
16005918 |
tgttgtgcaaagtgtttgtgtgttccatcgggaacatacggtaacaagcaagaatg---tccatgctatgataactggagaaataagaatggaggaccca |
16005822 |
T |
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| Q |
103 |
agtgcccctaatt |
115 |
Q |
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| T |
16005821 |
agtgcccctaatt |
16005809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 16047030 - 16047070
Alignment:
| Q |
3 |
tgttgtgcaaaatgtttgtgtgttccatctggaacttatgg |
43 |
Q |
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| T |
16047030 |
tgttgtgcaaaatgtttgtgtgtcccatcaggaacatatgg |
16047070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 16100181 - 16100221
Alignment:
| Q |
3 |
tgttgtgcaaaatgtttgtgtgttccatctggaacttatgg |
43 |
Q |
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| T |
16100181 |
tgttgtgcaaaatgtttgtgtgtcccatcaggaacatatgg |
16100221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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