View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_36 (Length: 249)
Name: NF10741_low_36
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42229168 - 42228932
Alignment:
| Q |
1 |
actattggaccaaatagccaatcataaaaacaaactagttggaaagtcaacagcagaaggtacgactaatattgctaacagattaaactaatctcaaacc |
100 |
Q |
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| T |
42229168 |
actattggaccaaatagccaatcataaaaacaaactagttggaaagtcaacagcagaaggtacgactaatattgctaacagattaaactaatctcaaacc |
42229069 |
T |
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| Q |
101 |
atacatacatacattgttgtaaacttcagggtc-aaagtaaaggaattgtaatgtgtgttgatcgtgatttgtannnnnnnngtccaagttagatgatgt |
199 |
Q |
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| T |
42229068 |
atacat----acattgttgtaaacttcagggtcaaaagtaaagaaattgtaatgtgtgttgatcgtgatttgta-tttttttgtccaagttagatgatgt |
42228974 |
T |
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| Q |
200 |
tggcctaaaaagagtgatcaacgagttgtatatattcatctc |
241 |
Q |
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| T |
42228973 |
tggcctaaaacgagtgatcaacgagttgtatatatttatctc |
42228932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 42228195 - 42228072
Alignment:
| Q |
46 |
gtcaacagcagaaggtacgactaatattgctaacagattaaactaatctcaaaccatacatacatacattgttgtaaacttcagggtcaaagtaaaggaa |
145 |
Q |
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| T |
42228195 |
gtcaacaacacaaggtatgactaatattgctcaaagatgaaatcaatctcaaaccatacat----acattgctgtaaactttaaggtcaaagcaaatgaa |
42228100 |
T |
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| Q |
146 |
ttgtaatgtgtgttgatcgtgatttgta |
173 |
Q |
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| T |
42228099 |
ctgatatatttgttgatcgtgatttgta |
42228072 |
T |
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