View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10741_low_39 (Length: 241)

Name: NF10741_low_39
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10741_low_39
NF10741_low_39
[»] chr3 (4 HSPs)
chr3 (38-141)||(38511214-38511318)
chr3 (35-95)||(46835555-46835615)
chr3 (39-114)||(45640689-45640764)
chr3 (44-114)||(51646886-51646956)
[»] chr1 (2 HSPs)
chr1 (39-99)||(44621419-44621479)
chr1 (43-115)||(47932414-47932486)
[»] chr6 (2 HSPs)
chr6 (44-115)||(9852104-9852175)
chr6 (174-212)||(1954465-1954503)
[»] chr5 (1 HSPs)
chr5 (40-99)||(34509399-34509458)
[»] chr7 (2 HSPs)
chr7 (39-99)||(26000017-26000077)
chr7 (41-116)||(44111380-44111456)
[»] chr2 (2 HSPs)
chr2 (44-114)||(24538238-24538308)
chr2 (47-114)||(32277045-32277112)
[»] chr8 (1 HSPs)
chr8 (35-114)||(30850194-30850273)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 38511318 - 38511214
Alignment:
Q  38 atatcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaat-ctttttggctccaatgtatggtggcctttgatttca 136  Q
    ||||| ||||||||| ||||| ||||||||||||||| ||||| ||  ||| |||||||||||  |||| ||| ||||||| |||||||| |||||||||    
T  38511318 atatcatacttatttttaatatgaataacacttttaacaaaatttgcaaactctaatcctaatgattttgggcgccaatgtttggtggccgttgatttca 38511219  T
Q  137 atcta 141  Q
    |||||    
T  38511218 atcta 38511214  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 46835615 - 46835555
Alignment:
Q  35 atcatatcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatc 95  Q
    |||||||| ||||||||| ||||| |||||||| | |||| ||| ||||||||||||||||    
T  46835615 atcatatcatacttatttctaatatgaataacaatattaacaaattgtgtcaaccctaatc 46835555  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 45640764 - 45640689
Alignment:
Q  39 tatcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaa 114  Q
    ||||||| |||| | |||||  ||||||| | |||| ||| |||||||||||||||||||||  ||||||||||||    
T  45640764 tatcttatttatctctaatatcaataacaatgttaacaaattgtgtcaaccctaatcctaatggttttggctccaa 45640689  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 51646886 - 51646956
Alignment:
Q  44 tacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaa 114  Q
    ||||||||| ||||| |||||||| | |||| ||  |||||||||||||||| | || |||||||||||||    
T  51646886 tacttatttctaatatgaataacattgttaacaatttgtgtcaaccctaatcttgatgtttttggctccaa 51646956  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 44621479 - 44621419
Alignment:
Q  39 tatcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaa 99  Q
    |||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||    
T  44621479 tatcttacttatttctaatactaataacaatgttaagaaaatgtgtcaaccctaatcctaa 44621419  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 47932414 - 47932486
Alignment:
Q  43 ttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaat 115  Q
    ||||||| || |||||| ||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||    
T  47932414 ttacttaattctaatactaataacaatgttaagaaattgtgtcaactctaatcctaatctttttggctccaat 47932486  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 9852104 - 9852175
Alignment:
Q  44 tacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaat 115  Q
    ||||||||| ||||| ||||||||||  ||| ||| |||| |||||||||||||||||||||||||||||||    
T  9852104 tacttatttctaatatgaataacactgctaaaaaattgtgccaaccctaatcctaatctttttggctccaat 9852175  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 1954465 - 1954503
Alignment:
Q  174 tatctaggtctatctaattttgtctagtaattatactta 212  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1954465 tatctaggtctatctaattttgtctagtaattatactta 1954503  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 34509458 - 34509399
Alignment:
Q  40 atcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaa 99  Q
    ||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||    
T  34509458 atcttacttatttctaatactaataacaatgttaagaaaatgtgtcaaccctaatcctaa 34509399  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 26000017 - 26000077
Alignment:
Q  39 tatcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaa 99  Q
    |||||||||||||| |||||| ||||||| | ||||||||||||| |||||||||||||||    
T  26000017 tatcttacttatttctaatactaataacaatgttaagaaaatgtgacaaccctaatcctaa 26000077  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 44111380 - 44111456
Alignment:
Q  41 tcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatccta-atctttttggctccaatg 116  Q
    ||||||||||||  ||||| ||||||| | |||||||||  ||||||||||||| ||| |||| |||||| ||||||    
T  44111380 tcttacttatttccaatactaataacaatgttaagaaaaattgtcaaccctaattctacatctctttggcaccaatg 44111456  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 24538238 - 24538308
Alignment:
Q  44 tacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaa 114  Q
    ||||||||| ||||| |||||||| | |||| ||| |||||||||||||||||||||  ||||||||||||    
T  24538238 tacttatttctaatatgaataacaatgttaacaaattgtgtcaaccctaatcctaatagttttggctccaa 24538308  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 32277045 - 32277112
Alignment:
Q  47 ttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaa 114  Q
    |||||| |||||| ||||||| | |||| |||||||||||||||||||||||||  ||||||| ||||    
T  32277045 ttatttctaatactaataacaatgttaaaaaaatgtgtcaaccctaatcctaattattttggcgccaa 32277112  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 30850273 - 30850194
Alignment:
Q  35 atcatatcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaa 114  Q
    |||||||| ||||||||| ||||| ||||||||||  ||| ||| |||| ||||||||||| ||||  ||||||||||||    
T  30850273 atcatatcatacttatttctaatatgaataacactgctaaaaaattgtgccaaccctaatcttaatgattttggctccaa 30850194  T

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