View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10741_low_46 (Length: 231)
Name: NF10741_low_46
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_46 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 42229618 - 42229379
Alignment:
| Q |
8 |
agaatggatagagtattatatatcaaacgagcaacataccgtgtttgaaattggattgggcagaactaacaatcatagaggacatgataagtaataaaag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42229618 |
agaatggatagagtattatatatcaaacgagcaacataccgtgtttgaaattggattgggcagaactaacaatcatagaggacatgataagtaataaaag |
42229519 |
T |
|
| Q |
108 |
taatgctaaatgattaacaaatgacttcaatttggaggcattgaagataggcgccatttctagcaa----------------tatgcagtatgtagttta |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42229518 |
taatgctaaatgattaacaaatgacttcaatttggaggcattgaagataggcgccatttctagcaaaaaaataaaatctatgtatgcagtatgtagttta |
42229419 |
T |
|
| Q |
192 |
attgcaagtttaggatgagaagtacataatatcacttgaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42229418 |
attgcaagtttaggatgagaagtacataatatcacttgaa |
42229379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 42215369 - 42215230
Alignment:
| Q |
38 |
gcaacataccgtgtttgaaattggattgggcagaactaac---aatcatagaggacatgataagtaataaaagtaatgctaaatgattaacaaatgactt |
134 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| |||||||| |||||| |||| |||||||| | ||||| || || ||| ||||| |
|
|
| T |
42215369 |
gcaacataccgtgtttgaaattggattgagcagcactaaccatcatcatagatgacatg---agtagtaaaagtattcctaaaagagcaaaaaacgactt |
42215273 |
T |
|
| Q |
135 |
caatttggaggcattgaagataggcgccatttctagcaatatg |
177 |
Q |
| |
|
|||||| ||||||||||||| || || ||||| || ||||||| |
|
|
| T |
42215272 |
caatttagaggcattgaagagagtcgtcatttttaacaatatg |
42215230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University