View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_5 (Length: 382)
Name: NF10741_low_5
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 370
Target Start/End: Original strand, 55300901 - 55301250
Alignment:
| Q |
21 |
gtgttgttggttgaagagcataagagaaagcatttgagggagagagtaacatcaaattcggagacagtattgtcacaacaagaaaatgctgacaaaacag |
120 |
Q |
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| T |
55300901 |
gtgttgttggttgaagagcataagagaaagcctttgagggagagagtaacatcaaattcggagacagtattgtcacaacaagaaaatgctgacaaaacag |
55301000 |
T |
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| Q |
121 |
atttgggtatggaggaggagatggaattggtgatgattgaacaagagaagccattgagagagagtcgtgcgtcacaagttgggaatgagaatgtactaat |
220 |
Q |
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| T |
55301001 |
atttgggtatggaggaggagatggaattggtgatgattgaacaagagaagccattgagagagagtcgtgcgtcacaagttgggaatgagaatgtactaat |
55301100 |
T |
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| Q |
221 |
aaatacagagacaacagatttgaaagcggaactcagagacttttggttgggtggtcaaaagactgcttctgaacaaacagtgtcaatggaattaccttgt |
320 |
Q |
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| T |
55301101 |
aaatacagagacaacaggtttgaaagaggaactcagagacttttggttgggtggtcaaaagactgcttctgaacaaacagtgtcaatggaattaccttgt |
55301200 |
T |
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| Q |
321 |
gagcataagtcgatgaacacggctgaggaaggaaatatgtatgagtatct |
370 |
Q |
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| T |
55301201 |
gagcataagtcgatgaacacggctgtggaaggaaatatgtatgagtatct |
55301250 |
T |
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