View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10741_low_51 (Length: 228)

Name: NF10741_low_51
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10741_low_51
NF10741_low_51
[»] chr3 (9 HSPs)
chr3 (13-209)||(476521-476717)
chr3 (14-208)||(481455-481649)
chr3 (85-209)||(1186728-1186855)
chr3 (85-209)||(1204792-1204919)
chr3 (85-209)||(1304171-1304298)
chr3 (86-208)||(8032792-8032917)
chr3 (114-208)||(777714-777808)
chr3 (95-208)||(5360524-5360640)
chr3 (98-131)||(1187099-1187132)
[»] chr2 (4 HSPs)
chr2 (10-209)||(43866953-43867152)
chr2 (95-208)||(43874722-43874835)
chr2 (95-202)||(38989600-38989707)
chr2 (95-209)||(43863563-43863677)
[»] scaffold0438 (1 HSPs)
scaffold0438 (84-199)||(5807-5925)
[»] chr8 (3 HSPs)
chr8 (84-199)||(26291426-26291544)
chr8 (84-199)||(26304683-26304801)
chr8 (84-199)||(26338038-26338156)
[»] chr4 (1 HSPs)
chr4 (95-208)||(52187308-52187421)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 476717 - 476521
Alignment:
Q  13 caaaggtatggacagttggagcatataactcgattccgaaagaggatctgaaattgttcctaggatcactgtcatacatacatatagttaaattgagaag 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | || ||||||||||||||||||||||||||    
T  476717 caaaagtatggacagttggagcatataactcgattccgaaagaggatctgaaatttttccgaggatcattatcgtacatacatatagttaaattgagaag 476618  T
Q  113 cttggtacttgaaatgcgaaggttttgtgcatccagaagtacaaaacagtcaatgatcaaagtattcaacatgttaaatgtggaaaaggggtcgacg 209  Q
    |||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476617 cttggtacttgaaatgcgaaggttttgtgcatccagaattacacataagtcaatgatcaaagtattcaacatgttaaatgtggaaaaggggtcgacg 476521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 481649 - 481455
Alignment:
Q  14 aaaggtatggacagttggagcatataactcgattccgaaagaggatctgaaattgttcctaggatcactgtcatacatacatatagttaaattgagaagc 113  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||  ||||||||||||||||||||| ||||||||    
T  481649 aaaggtatgaacagttggagcatataactcaattccgaaataggttctgaaattgtccctaggatcaccatcatacatacatatagttaaactgagaagc 481550  T
Q  114 ttggtacttgaaatgcgaaggttttgtgcatccagaagtacaaaacagtcaatgatcaaagtattcaacatgttaaatgtggaaaaggggtcgac 208  Q
    |||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  481549 ttggtacttgaaatgcaaaggtttcgtgcatccagaagtacacagcagtcaatgatcaaagtatccaacatgttaaatgcggaaaaggggtcgac 481455  T

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Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 1186855 - 1186728
Alignment:
Q  85 catacatacatatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcat---ccagaagtacaaaacagtcaatgatcaaagtattcaa 181  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||   ||  ||||||| | | |||||||||||||||||||||    
T  1186855 catacatacgtatagttaaattgagaagcttggtacatgaaatgcgaaggttttgtgcattacccctaagtacacagcggtcaatgatcaaagtattcaa 1186756  T
Q  182 catgttaaatgtggaaaaggggtcgacg 209  Q
    ||||||||||||||||||||||||||||    
T  1186755 catgttaaatgtggaaaaggggtcgacg 1186728  T

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Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 1204919 - 1204792
Alignment:
Q  85 catacatacatatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcat---ccagaagtacaaaacagtcaatgatcaaagtattcaa 181  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||   ||  ||||||| | | |||||||||||||||||||||    
T  1204919 catacatacgtatagttaaattgagaagcttggtacatgaaatgcgaaggttttgtgcattacccctaagtacacagcggtcaatgatcaaagtattcaa 1204820  T
Q  182 catgttaaatgtggaaaaggggtcgacg 209  Q
    ||||||||||||||||||||||||||||    
T  1204819 catgttaaatgtggaaaaggggtcgacg 1204792  T

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Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 1304171 - 1304298
Alignment:
Q  85 catacatacatatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcat---ccagaagtacaaaacagtcaatgatcaaagtattcaa 181  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||   ||  ||||||| | | |||||||||||||||||||||    
T  1304171 catacatacgtatagttaaattgagaagcttggtacatgaaatgcgaaggttttgtgcattacccctaagtacacagcggtcaatgatcaaagtattcaa 1304270  T
Q  182 catgttaaatgtggaaaaggggtcgacg 209  Q
    ||||||||||||||||||||||||||||    
T  1304271 catgttaaatgtggaaaaggggtcgacg 1304298  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 8032792 - 8032917
Alignment:
Q  86 atacatacatatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgca---tccagaagtacaaaacagtcaatgatcaaagtattcaac 182  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||   || | ||||||| |   |||||||||||||||| |||||    
T  8032792 atacacacatatagttaaattgacaagcttggtatttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaac 8032891  T
Q  183 atgttaaatgtggaaaaggggtcgac 208  Q
    ||||||||||  |||||||| |||||    
T  8032892 atgttaaatgcagaaaagggatcgac 8032917  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 777714 - 777808
Alignment:
Q  114 ttggtacttgaaatgcgaaggttttgtgcatccagaagtacaaaacagtcaatgatcaaagtattcaacatgttaaatgtggaaaaggggtcgac 208  Q
    ||||||||||| |||| ||||||||||||||||| || || | |||| |||||||||||| |||||||||| |||||||| ||||| || |||||    
T  777714 ttggtacttgatatgcaaaggttttgtgcatccataactatacaacaatcaatgatcaaactattcaacattttaaatgttgaaaatggctcgac 777808  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 5360524 - 5360640
Alignment:
Q  95 tatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcat---ccagaagtacaaaacagtcaatgatcaaagtattcaacatgttaaat 191  Q
    |||||||||||| | | |||||||||||||||| ||| ||||||||||||   | ||||||||| | | ||||||| ||||||||  |||||||||||||    
T  5360524 tatagttaaattaacaggcttggtacttgaaatacgatggttttgtgcattagcaagaagtacacagcggtcaatgctcaaagtagacaacatgttaaat 5360623  T
Q  192 gtggaaaaggggtcgac 208  Q
      |||||||||||||||    
T  5360624 tcggaaaaggggtcgac 5360640  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 1187132 - 1187099
Alignment:
Q  98 agttaaattgagaagcttggtacttgaaatgcga 131  Q
    ||||||||||||||||||||||| ||||||||||    
T  1187132 agttaaattgagaagcttggtacatgaaatgcga 1187099  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 43866953 - 43867152
Alignment:
Q  10 aagcaaaggtatggacagttggagcatataactcgattccgaaagaggatctgaaattgttcctaggatcactgtcatacatacatatagttaaattgag 109  Q
    |||||||||| || | | |||||||||| | ||||| ||| ||| ||| || || | || || |||| ||||  |||| ||||  ||||||||||||||     
T  43866953 aagcaaaggtttgaagacttggagcatacagctcgagtccaaaataggttccgataatggtcttaggctcacaatcatgcataattatagttaaattgac 43867052  T
Q  110 aagcttggtacttgaaatgcgaaggttttgtgcatccagaagtacaaaacagtcaatgatcaaagtattcaacatgttaaatgtggaaaaggggtcgacg 209  Q
    ||||||||||||||| |||| |||||||||||||||| ||| || | ||| |||||||||||||  |||||||||||||||||| |||||||| ||||||    
T  43867053 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactatacaactgtcaatgatcaaacgattcaacatgttaaatgtcgaaaagggctcgacg 43867152  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 43874722 - 43874835
Alignment:
Q  95 tatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcatccagaagtacaaaacagtcaatgatcaaagtattcaacatgttaaatgtg 194  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||| || | ||| |||||||||||||  ||||||||||||||||||     
T  43874722 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgtt 43874821  T
Q  195 gaaaaggggtcgac 208  Q
    |||||||| |||||    
T  43874822 gaaaagggctcgac 43874835  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 38989707 - 38989600
Alignment:
Q  95 tatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcatccagaagtacaaaacagtcaatgatcaaagtattcaacatgttaaatgtg 194  Q
    |||| ||||||||| ||||||||||||||| |||| ||| |||||||| ||||||| || | ||||||||||||||||| |||||||||| |||||||||    
T  38989707 tatacttaaattgacaagcttggtacttgatatgcaaagattttgtgcgtccagaactatacaacagtcaatgatcaaactattcaacattttaaatgtg 38989608  T
Q  195 gaaaaggg 202  Q
    ||||||||    
T  38989607 gaaaaggg 38989600  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 43863563 - 43863677
Alignment:
Q  95 tatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcatccagaagtacaaaacagtcaatgatcaaagtattcaacatgttaaatgtg 194  Q
    |||||||||||||| |||| |||||||||| |||| |||||||||||||||| ||| || | ||| |||||||||||||  || |||||||||| ||||     
T  43863563 tatagttaaattgacaagcctggtacttgatatgcaaaggttttgtgcatcctgaactatacaactgtcaatgatcaaacgatccaacatgttatatgtc 43863662  T
Q  195 gaaaaggggtcgacg 209  Q
    || ||||| ||||||    
T  43863663 gagaagggctcgacg 43863677  T

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Target: scaffold0438 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 5925 - 5807
Alignment:
Q  84 tcatacatacatatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgca---tccagaagtacaaaacagtcaatgatcaaagtattca 180  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||   || | ||||||| |   |||||||||||||||| |||    
T  5925 tcatacacacatatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtca 5826  T
Q  181 acatgttaaatgtggaaaa 199  Q
    ||||||| |||||||||||    
T  5825 acatgttgaatgtggaaaa 5807  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 26291544 - 26291426
Alignment:
Q  84 tcatacatacatatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgca---tccagaagtacaaaacagtcaatgatcaaagtattca 180  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||   || | ||||||| |   |||||||||||||||| |||    
T  26291544 tcatacacacatatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtca 26291445  T
Q  181 acatgttaaatgtggaaaa 199  Q
    ||||||| |||||||||||    
T  26291444 acatgttgaatgtggaaaa 26291426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 26304801 - 26304683
Alignment:
Q  84 tcatacatacatatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgca---tccagaagtacaaaacagtcaatgatcaaagtattca 180  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||   || | ||||||| |   |||||||||||||||| |||    
T  26304801 tcatacacacatatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtca 26304702  T
Q  181 acatgttaaatgtggaaaa 199  Q
    ||||||| |||||||||||    
T  26304701 acatgttgaatgtggaaaa 26304683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 26338156 - 26338038
Alignment:
Q  84 tcatacatacatatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgca---tccagaagtacaaaacagtcaatgatcaaagtattca 180  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||   || | ||||||| |   |||||||||||||||| |||    
T  26338156 tcatacacacatatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtca 26338057  T
Q  181 acatgttaaatgtggaaaa 199  Q
    ||||||| |||||||||||    
T  26338056 acatgttgaatgtggaaaa 26338038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 52187421 - 52187308
Alignment:
Q  95 tatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcatccagaagtacaaaacagtcaatgatcaaagtattcaacatgttaaatgtg 194  Q
    |||| ||||||||| ||| |||| |||||| |||| ||| |||||||| || |||| || | |||||||||||| |||| | |||||||| ||||| |||    
T  52187421 tatacttaaattgacaagtttggcacttgatatgcaaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacattttaaacgtg 52187322  T
Q  195 gaaaaggggtcgac 208  Q
    |||||||| |||||    
T  52187321 gaaaagggctcgac 52187308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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