View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_53 (Length: 227)
Name: NF10741_low_53
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 42313902 - 42314116
Alignment:
| Q |
1 |
tggctgctcagatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagtttctcttggtatgaagactcataacctt |
100 |
Q |
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| T |
42313902 |
tggctgctcagatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagtttctcttggtatgaagactcataacctt |
42314001 |
T |
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| Q |
101 |
tttacagattcaatatctacaggttcctttcatgcagtagcaaatggtatagtagtagttgcttctgctggaaattctggtccttattttggaactgttt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42314002 |
tttacagattcaatatctataggttcctttcatgcagtagcaaatggtatagtagtagttgcttctgctggaaattctggtccttattttggaactgttt |
42314101 |
T |
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| Q |
201 |
cgaacgtggcacctt |
215 |
Q |
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||||||||||||||| |
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| T |
42314102 |
cgaacgtggcacctt |
42314116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 23040693 - 23040754
Alignment:
| Q |
11 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
72 |
Q |
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| T |
23040693 |
gatgcagatattttggctggttttgaagctgcaataagtgatggtgttgatgtactttcagt |
23040754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 42734729 - 42734790
Alignment:
| Q |
11 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
72 |
Q |
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| T |
42734729 |
gatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagt |
42734790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 42762750 - 42762710
Alignment:
| Q |
26 |
gctggttttgaagctgccataagtgacggtgttgatgtgct |
66 |
Q |
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| T |
42762750 |
gctggttttgaagctgccataagtgatggtgttgatgtgct |
42762710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 42717156 - 42717095
Alignment:
| Q |
11 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
72 |
Q |
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||||||||| | || |||||||||||||||||||||||||| ||||| || ||||| ||||| |
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| T |
42717156 |
gatgcagatattttggctggttttgaagctgccataagtgatggtgtcgacgtgctttcagt |
42717095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 42743782 - 42743720
Alignment:
| Q |
10 |
agatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
72 |
Q |
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|||||||||| | || ||||||||||||||||| |||||||| ||||| || ||||| ||||| |
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| T |
42743782 |
agatgcagatattttggctggttttgaagctgcaataagtgatggtgtcgacgtgctttcagt |
42743720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 42753141 - 42753079
Alignment:
| Q |
10 |
agatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
72 |
Q |
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|||||||||| | || ||||||||||||||||| |||||||| ||||| || ||||| ||||| |
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| T |
42753141 |
agatgcagatattttggctggttttgaagctgcaataagtgatggtgtcgacgtgctttcagt |
42753079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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