View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10741_low_55 (Length: 225)

Name: NF10741_low_55
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10741_low_55
NF10741_low_55
[»] chr8 (3 HSPs)
chr8 (1-176)||(38341932-38342106)
chr8 (192-225)||(38341901-38341934)
chr8 (137-166)||(16515088-16515117)
[»] chr2 (3 HSPs)
chr2 (119-200)||(21449705-21449781)
chr2 (89-166)||(41873714-41873792)
chr2 (117-154)||(37423155-37423192)
[»] chr6 (2 HSPs)
chr6 (49-108)||(779494-779553)
chr6 (89-163)||(10525381-10525454)
[»] chr5 (4 HSPs)
chr5 (41-86)||(37910342-37910387)
chr5 (71-110)||(19176059-19176098)
chr5 (45-103)||(22771161-22771219)
chr5 (114-166)||(37910257-37910309)
[»] chr4 (4 HSPs)
chr4 (134-166)||(38870697-38870729)
chr4 (49-107)||(16502241-16502299)
chr4 (134-164)||(49445045-49445075)
chr4 (193-225)||(16502583-16502615)
[»] chr1 (3 HSPs)
chr1 (114-166)||(40077026-40077078)
chr1 (131-166)||(50845719-50845754)
chr1 (49-102)||(46395985-46396042)
[»] chr7 (1 HSPs)
chr7 (114-161)||(8530377-8530423)
[»] chr3 (2 HSPs)
chr3 (58-109)||(31148873-31148924)
chr3 (49-102)||(44442264-44442321)
[»] scaffold0493 (1 HSPs)
scaffold0493 (183-225)||(4192-4234)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 38342106 - 38341932
Alignment:
Q  1 atctttttcacgtctctgatttgtgtttctgattgtgtagttgatttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagtt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342106 atctttttcacttctctgatttgtgtttctgattgtgtagttgatttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagtt 38342007  T
Q  101 gttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataagagaacacaaaaggttagata 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  38342006 gttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataggagaacac-aaaggttagata 38341932  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 38341934 - 38341901
Alignment:
Q  192 atattgtaaaggggaaacccttggaggagagatt 225  Q
    ||||||||||||||||||||||||||||||||||    
T  38341934 atattgtaaaggggaaacccttggaggagagatt 38341901  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 166
Target Start/End: Original strand, 16515088 - 16515117
Alignment:
Q  137 agagtatgtgtataaataagagaacacaaa 166  Q
    ||||||||||||||||||||||||||||||    
T  16515088 agagtatgtgtataaataagagaacacaaa 16515117  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 21449781 - 21449705
Alignment:
Q  119 gttattcggattggttagagagtatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaa 200  Q
    |||||| |||||  |||||||||||||||||||||| ||||||| |||| ||    ||||||||||||||||||||||||||    
T  21449781 gttatttggattacttagagagtatgtgtataaataggagaaca-aaaatgt----taaagagtatcttttgaatattgtaa 21449705  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 41873792 - 41873714
Alignment:
Q  89 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaa-taagagaacacaaa 166  Q
    ||||||||||||| |||||| ||| |   ||||||| ||||| ||||||||||||||||||||| || |||||||||||    
T  41873792 tagttaagagttgctatagttagttacaaagttatttggattagttagagagtatgtgtataaattaggagaacacaaa 41873714  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 37423192 - 37423155
Alignment:
Q  117 tagttattcggattggttagagagtatgtgtataaata 154  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  37423192 tagttatttggattagttagagagtatgtgtataaata 37423155  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 779494 - 779553
Alignment:
Q  49 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagt 108  Q
    |||| |||||| ||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  779494 tgttaggatatggaataatggctaaatagagtagttaatgtagttaagagctgctatagt 779553  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 10525454 - 10525381
Alignment:
Q  89 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataagagaacac 163  Q
    |||||| ||||||||| ||  ||| |||| ||| || ||||| |||||||||| |||||||||||||||||||||    
T  10525454 tagttatgagttgttagaga-agttagtttgttttttggattagttagagagtgtgtgtataaataagagaacac 10525381  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 37910387 - 37910342
Alignment:
Q  41 ttgatttgtgttgggatatagaataatggctaattagagtagttaa 86  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||    
T  37910387 ttgagttgtgttgggatgtagaataatgactaattagagtagttaa 37910342  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 19176059 - 19176098
Alignment:
Q  71 taattagagtagttaatctagttaagagttgttatagtca 110  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  19176059 taattagagtagttaaagtagttaagagttgttatagtca 19176098  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 22771161 - 22771219
Alignment:
Q  45 tttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgtt 103  Q
    |||||||| ||||||| |||||||||||| ||||||||||||  ||| || ||||||||    
T  22771161 tttgtgttaggatataaaataatggctaactagagtagttaaattagctatgagttgtt 22771219  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 37910309 - 37910257
Alignment:
Q  114 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 166  Q
    ||||||||||| ||||| |||| |||||||||| ||||||| ||||| |||||    
T  37910309 agttagttatttggattagttaaagagtatgtgcataaataggagaatacaaa 37910257  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 38870729 - 38870697
Alignment:
Q  134 tagagagtatgtgtataaataagagaacacaaa 166  Q
    |||||||||||||||||||||||||||||||||    
T  38870729 tagagagtatgtgtataaataagagaacacaaa 38870697  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 16502241 - 16502299
Alignment:
Q  49 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatag 107  Q
    |||| |||||||  |||||||| |||||| ||||||||  |||||||||||||||||||    
T  16502241 tgttaggatatattataatggccaattagtgtagttaaagtagttaagagttgttatag 16502299  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 49445075 - 49445045
Alignment:
Q  134 tagagagtatgtgtataaataagagaacaca 164  Q
    |||||||||||||||||||||||||||||||    
T  49445075 tagagagtatgtgtataaataagagaacaca 49445045  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 16502583 - 16502615
Alignment:
Q  193 tattgtaaaggggaaacccttggaggagagatt 225  Q
    |||||| ||||||||||||||||||||||||||    
T  16502583 tattgtgaaggggaaacccttggaggagagatt 16502615  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 40077026 - 40077078
Alignment:
Q  114 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 166  Q
    |||| |||||| ||||| ||||||||||||||| ||||||| |||||||||||    
T  40077026 agtttgttatttggattagttagagagtatgtgcataaataggagaacacaaa 40077078  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 50845754 - 50845719
Alignment:
Q  131 ggttagagagtatgtgtataaataagagaacacaaa 166  Q
    ||||||||||||||||||||||||||| ||||||||    
T  50845754 ggttagagagtatgtgtataaataagaaaacacaaa 50845719  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 46395985 - 46396042
Alignment:
Q  49 tgttgggatatagaataatggc----taattagagtagttaatctagttaagagttgt 102  Q
    |||| |||||||||||||||||    |||||||| |||||||| ||||||||||||||    
T  46395985 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 46396042  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 8530423 - 8530377
Alignment:
Q  114 agttagttattcggattggttagagagtatgtgtataaataagagaac 161  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  8530423 agttagttatttggattagttagagag-atgtgtataaataagagaac 8530377  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 31148924 - 31148873
Alignment:
Q  58 atagaataatggctaattagagtagttaatctagttaagagttgttatagtc 109  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||| ||||    
T  31148924 atagaatagtggttaattagagtagttaaagtagttaagagttgttacagtc 31148873  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 44442321 - 44442264
Alignment:
Q  49 tgttgggatatagaataatggctaatta----gagtagttaatctagttaagagttgt 102  Q
    |||| |||||||||||||||||||||||    || |||||||| ||||||||||||||    
T  44442321 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 44442264  T

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Target: scaffold0493 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 4234 - 4192
Alignment:
Q  183 atcttttgaatattgtaaaggggaaacccttggaggagagatt 225  Q
    |||||||||||||||| || |||||||||||| ||||||||||    
T  4234 atcttttgaatattgtgaatgggaaacccttgaaggagagatt 4192  T

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