View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_61 (Length: 209)
Name: NF10741_low_61
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 10558137 - 10558311
Alignment:
| Q |
15 |
gaagcagagatatggaacaaagtattcgagaaggcagagaagatgacaggcattgaaagaggaagcataagagccacagttttgattgaaacacttcctg |
114 |
Q |
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| T |
10558137 |
gaagcaaagatatggaacaaagtattcgagaaggcagagaagatgacaggcattgaaagaggaagcataagagccacagttttgattgaaacacttcctg |
10558236 |
T |
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| Q |
115 |
cagtgtttcaaatggatgaaattctgtatgagctcagagatcactctgttggtctcaactgtggccgttgggatt |
189 |
Q |
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| T |
10558237 |
cagtgtttcaaatggatgaaattctgtatgagctcagagatcactctgttggtctcaactgtggccgttgggatt |
10558311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 10560244 - 10560372
Alignment:
| Q |
22 |
agatatggaacaaagtattcgagaaggcagagaagatgacaggcattgaaagaggaagcataagagccacagttttgattgaaacacttcctgcagtgtt |
121 |
Q |
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|||||||||||||||| || ||||||||||||||| || |||||| | |||||||||||||| ||||| | ||| ||||||||||||||||||||||||| |
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| T |
10560244 |
agatatggaacaaagtgtttgagaaggcagagaagttggcaggcactaaaagaggaagcata-gagccgctgttctgattgaaacacttcctgcagtgtt |
10560342 |
T |
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| Q |
122 |
tcaaatggatgaaattctgtatgagctcag |
151 |
Q |
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| T |
10560343 |
tcaaatggatgaaattttgtatgagctcag |
10560372 |
T |
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