View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_63 (Length: 202)
Name: NF10741_low_63
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 36424928 - 36424750
Alignment:
| Q |
1 |
aaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgtttgagtgtata |
100 |
Q |
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| T |
36424928 |
aaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgtttgagtgtata |
36424829 |
T |
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| Q |
101 |
gcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgt |
179 |
Q |
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| T |
36424828 |
gcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacgaggaagagtagctcggctgaacgagggtgtgt |
36424750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 36421404 - 36421224
Alignment:
| Q |
1 |
aaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgtttgagtgtata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||| |
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| T |
36421404 |
aaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccaggttgtagtgtctgagtgaata |
36421305 |
T |
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| Q |
101 |
gcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgtat |
181 |
Q |
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| T |
36421304 |
gcttattggttgtgtcaacaaaaccaacattaagggaacctttaacgaggaagagtagctcggctgaacgagggtgtgtat |
36421224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 36427901 - 36427723
Alignment:
| Q |
1 |
aaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgtttgagtgtata |
100 |
Q |
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||||| ||||||| ||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
36427901 |
aaagccaaagcaggttttgaagtatcagcattgaactgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgtagtgtttgagtgaata |
36427802 |
T |
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| Q |
101 |
gcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgt |
179 |
Q |
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|||| || || ||||| || ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
36427801 |
gcttattagtggtgtccacaaaaccaacattcagggaacctttcgcgaggaagagtagctcggctgaacgagggtgtgt |
36427723 |
T |
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