View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10741_low_7 (Length: 363)
Name: NF10741_low_7
Description: NF10741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10741_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 40397266 - 40397600
Alignment:
| Q |
19 |
atagggttggtgtgatttgatattgtatgtatatgtacaacgtaataggtccaatcaaacataaaactttagcaaaatattcaaattcctcccttgcttc |
118 |
Q |
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| T |
40397266 |
atagggttggtgtgatttgatattgtatgtatatgtacaacgtaataggcccaatcaaccataaaactttagcaaaaaattcaaattcctcccttgcttc |
40397365 |
T |
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| Q |
119 |
cacttctgttgatagattttcttgcaaagttgtttgtcatcttagtacca--aatcacctttctgtctttcagctctcaaattcatattcatttttctac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40397366 |
cacttctgttgatagattttcttgcaaagttgtttgtcctcttagtaccaacaatcacctttctgtctttcagctctcaaattcatattcatttttctac |
40397465 |
T |
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| Q |
217 |
tattannnnnnnnnncttttccaaaccaaacatattcaactttcaagtcatatctagggctttatttttcgtattccaacatgtatattggatttatttg |
316 |
Q |
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| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40397466 |
tttaattttttttt--ttttccaaaccaaacatattcaactttcaagtcatatctagggctttatttttcgtattccaacatgtatattggatttatttg |
40397563 |
T |
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| Q |
317 |
tcatatgcatttggcgtcttccgtatacacaggttct |
353 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
40397564 |
tcatatgcatttggcgtcttccgtatacacaggttct |
40397600 |
T |
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