View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_high_10 (Length: 328)
Name: NF10742_high_10
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 44465123 - 44465432
Alignment:
| Q |
1 |
ctaatcaaattcatctaggtattgcacctggcccactaattaaactgaccacactcctaagcaaatgtgactcctaaattaatatgaagaaagtttctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44465123 |
ctaatcaaattcatctaggtattgcacctggcccactaattaaactgaccacactcctaagcaaatgtgactcctaaattaatatgaagaaagtttctaa |
44465222 |
T |
|
| Q |
101 |
gtgtaagggtgcgcgtttttatttgaaaaattgtgattaattataaaatgccttgctactctaaacaaannnnnnnggttctcctgtcagaggacttgtc |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44465223 |
gtgtatgggtgcgcgtttttatttgaaaaattgtgattaattataaaatgccttgctactctaaacaaatttttttggttctcctgtcagaggacttgtc |
44465322 |
T |
|
| Q |
201 |
atagaatacgacatcctgaccattgtgataaccgtctctcgattaacactttaaactacatgaattcataaattattacaaacagaagcataccaattgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
44465323 |
atagaatacgacatcctgaccattgtgataaccgtctcttgattaacactttaaaatacatgaagtcataaattattagaaacagaagcataccaattgt |
44465422 |
T |
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| Q |
301 |
ccacctgaag |
310 |
Q |
| |
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|||||||||| |
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| T |
44465423 |
ccacctgaag |
44465432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 39355562 - 39355364
Alignment:
| Q |
1 |
ctaatcaaattcatctaggtattgcacctggcccactaattaaactgaccacactcctaagcaaatgtgactcctaaattaatatgaagaaagtttctaa |
100 |
Q |
| |
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|||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || |
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| T |
39355562 |
ctaatcaaattcatttaggtaatgaacctggcccactaatcaaactgaccacactcctaagcaattgtgactcctaaattaatgagaagaaagtttccaa |
39355463 |
T |
|
| Q |
101 |
gtgtaagggtgcgcgtttttatttgaaaaattgtgattaattataaaatgccttgctactctaaacaaannnnnnnggttctcctgtcagaggacttgtc |
200 |
Q |
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||||||||||| |||||||||||||||||| || ||||||| ||||||||||| |||||||||| ||| ||||||||||||||| |||||||| |
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| T |
39355462 |
gtgtaagggtgggcgtttttatttgaaaaaacgtcattaattctaaaatgccttactactctaaataaa-ttgtttggttctcctgtcagaagacttgtc |
39355364 |
T |
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