View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_high_12 (Length: 276)
Name: NF10742_high_12
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 48474622 - 48474884
Alignment:
| Q |
1 |
actttagtgtgaagtttgtactattccagcattagtttcctcaatttgttcctgtttgggagcatcagaagcatctccataagagttttgaggagtttcc |
100 |
Q |
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| T |
48474622 |
actttagtgtgaagtttgtagtattccagcattagttttctcaatttgttcctgtttgggagcatcaaaagcatctccgtaagagttttgaggagtttcc |
48474721 |
T |
|
| Q |
101 |
acttcaatgaatcgatcaagatcttatcaaattgacattcaatgagaggaatgtttagaggctcattttgattatcaatcatctcttcaagttgattttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48474722 |
acttcaatgaatcgatcaagatcttatcaaattgacattcaatgagaggaatgtttagaggctcattttgattttcaatcatctcttcaagttgattttc |
48474821 |
T |
|
| Q |
201 |
aacttgatcaacaatctctgttagcctctcctccttatatgagtgggaggcgcgaactttcct |
263 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
48474822 |
aacttgatcaacaatctctgttagcctctgctccttatatgagtgggaggcgcaaactttcct |
48474884 |
T |
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