View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10742_high_18 (Length: 246)
Name: NF10742_high_18
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 41151065 - 41150846
Alignment:
| Q |
11 |
cataggaggaaggtttagtctttgaagatcctcttcattcatgccaacagaaacaattcctgatccatgtttaatcataaaagccacatctttggtacta |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41151065 |
cataagaggaaggtttagtctttgaagatcctcttctttcatgccaacagaaacaattcctgatccatgtttaatcataaaagccacatctttggtacta |
41150966 |
T |
|
| Q |
111 |
attagagatgcagcctttataagatttccttcaacattgttgttttcatcatctacaacgattacaaacttcnnnnnnntattgatctaggagttagata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41150965 |
attagagatgcagcctttataagatttccttcaacattgttgttttcatcatctacaacgattacaaacttcaaaaaaatattgatctaggagttagata |
41150866 |
T |
|
| Q |
211 |
tgatcaatccattatttaat |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41150865 |
tgatcaatccattatttaat |
41150846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University