View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_high_19 (Length: 240)
Name: NF10742_high_19
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_high_19 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 41708410 - 41708188
Alignment:
| Q |
17 |
aaaaagtaggtatgaaaagagttttgactttcaagacattattatctggactactaagtcgttaatgacttgactatcaagatgttactaaatatataag |
116 |
Q |
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| T |
41708410 |
aaaaagtaggtatgaaaagagttttgaccttcaagacattattatctggactactaagtcgttaatgacttgactatcaagatgttactaaatatataag |
41708311 |
T |
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| Q |
117 |
atacatactaaatataaatgatatttgaatattctaatattaccctcaggggtattaggattatgtttggaaaggnnnnnnnntctagaaacttgaaaga |
216 |
Q |
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| T |
41708310 |
atacatactaaatataaatgatatttgcatattctaatattaccctca-gggtattaggattatgtttggaaaggaaaaaaaatctagaaacttgaaaga |
41708212 |
T |
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| Q |
217 |
gagcttatatttatggacatatat |
240 |
Q |
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| T |
41708211 |
gagcttatatttatggacatatat |
41708188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 11752232 - 11752144
Alignment:
| Q |
65 |
gactactaagtcgttaatgacttgactatcaagatgttactaaatatataagatacatactaaatataaatgatatttgaatattctaata |
155 |
Q |
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| T |
11752232 |
gactactaagtcattactgacttgactatcaagacattaccaaataca-aggatacat-ctaaatataaaagatatttacatattataata |
11752144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 33243930 - 33244005
Alignment:
| Q |
65 |
gactactaagtcgttaatgacttgactatcaagatgttactaaatatataagatacatactaaatataaatgatat |
140 |
Q |
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| T |
33243930 |
gactaccaagttgttgttgacttgagtatcaagatgttactaaacataaaagatacatactaaaaataaaagatat |
33244005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 25160234 - 25160317
Alignment:
| Q |
72 |
aagtcgttaatgacttgactatcaagatgttactaaatatataagatacatactaaatataaatgatatttgaatattctaata |
155 |
Q |
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| T |
25160234 |
aagtcgttactatcttgactatcaagatgttaccaaatataaaagatacatgcaaaatttaaaatgtattttcatattctaata |
25160317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 26952712 - 26952781
Alignment:
| Q |
86 |
ttgactatcaagatgttactaaatatataagatacatactaaatataaatgatatttgaatattctaata |
155 |
Q |
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| T |
26952712 |
ttgactatcaagacgttactaaatataaaagatacatactacatataaaatatatttacatattttaata |
26952781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 26744807 - 26744757
Alignment:
| Q |
105 |
taaatatataagatacatactaaatataaatgatatttgaatattctaata |
155 |
Q |
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| T |
26744807 |
taaatataaaagatacatactaaatataaaagatacttaaatattataata |
26744757 |
T |
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