View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_high_23 (Length: 236)
Name: NF10742_high_23
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 51458065 - 51457970
Alignment:
| Q |
126 |
gtgagagatgagagactaaccaagaagctttgtagcacccaagagactgttaagtccatcatactcgcatgatttgacatgaacaataccttgaac |
221 |
Q |
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| T |
51458065 |
gtgagagatgagagactaaccaagaagctttgtagcacccaagagactgttaagtccatcatactcgcatgatttgacatgaacaataccttgaac |
51457970 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 51458177 - 51458119
Alignment:
| Q |
13 |
aagaaatgaaaatgacgttattgaaggagagaaataaataaaagaaatctgtatctacc |
71 |
Q |
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| T |
51458177 |
aagaaatgaaaatgacgttattgaaggagagaaataaataaaagaaatatgtatctacc |
51458119 |
T |
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