View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_high_28 (Length: 216)
Name: NF10742_high_28
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 46959415 - 46959216
Alignment:
| Q |
1 |
tcaagtggcgaacatatccttcattaatattataggaacttcggcctccaaagaaaccattaaatttgcctgcagtgatacctatccatgtgaaggacta |
100 |
Q |
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| T |
46959415 |
tcaagtggtgaacatatccttcattaatattataggaacttcggcctccgaagaaaccattaaatttgcctgcagtgatacctatccatgtgaaggacta |
46959316 |
T |
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| Q |
101 |
tatctcgaaaatatttatcttccatcatactttggagaaaatagaagatcttactgttggcaagctcatggttctacttcttctcaaggctgggtgaatc |
200 |
Q |
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| T |
46959315 |
catctcgaaaatatttatcttccatcatactttggagaaaatagaagatcttactgttggcaagctcatggttctacttcttctcaaggctgtgtgaatc |
46959216 |
T |
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Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 44522704 - 44522878
Alignment:
| Q |
1 |
tcaagtggcgaacatatccttcattaatattataggaacttcggcctccaaagaaaccattaaatttgcctgcagtgatacctatccatgtgaaggacta |
100 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| | | |||||| ||||||||| |
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| T |
44522704 |
tcaagtggggaacatatccttcattaatattcaaggaacttcggccaccgaagaaaccattaaatttgcctgcagtgatgcttctccatgcgaaggacta |
44522803 |
T |
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| Q |
101 |
tatctcgaaaatatttatcttccatcatactttggagaaaatagaagatcttactgttggcaagctcatggttct |
175 |
Q |
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||||| |||||||||| ||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||| |
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| T |
44522804 |
tatctggaaaatatttttcttcgatcatactttggaggaaatacaagatcttattgttggcaagctcatggttct |
44522878 |
T |
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