View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_high_6 (Length: 392)
Name: NF10742_high_6
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 40179923 - 40179562
Alignment:
| Q |
14 |
gagcttgaagaagaattgcatggtgaaggttctttctttgtctttgcaactttagttacctacaaaattaacaacaacccaattccaaaatcgttataat |
113 |
Q |
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| T |
40179923 |
gagcttgaagaagaattgcatggtgaaggttctttctttgtctttgcaactttagttacctacaaaattaacaacaacccaattccaaaatcgttataat |
40179824 |
T |
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| Q |
114 |
cacgcataaaattcaaatgggtcttcatttttcgcgatggaattgaaaaagaacgaatctttaaagaagatggaagggtgnnnnnnnntataccaaagta |
213 |
Q |
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| T |
40179823 |
cacgcataaaattcaaatgggtcttcatttttcgcgatggaattgaaaaagaacgaatctttaaagaagatggaagggtgaaaaaaaa-ataccaaagta |
40179725 |
T |
|
| Q |
214 |
gatgagttgttgcgggaagaattttgattggtgagattagtgagaggaggacgtttcttggcagaggctgctaaaacttttccggcgttgttctctgatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40179724 |
gatgagttgttgcgggaagaattttgattggtgagattagtgagaggaggacgtttcttggcagaggctgctaaaacttttccggcgttgttctctgatg |
40179625 |
T |
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| Q |
314 |
ttaaagcggtaacaggtgggtgtcgtttcgccattgacgacgttgttgaagaagaaaacgatg |
376 |
Q |
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| T |
40179624 |
ttaaagcggtaacaggtgggtgtcgtttcgccattgacgaagttgttgaagaagaaaacgatg |
40179562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 129 - 376
Target Start/End: Original strand, 53193919 - 53194166
Alignment:
| Q |
129 |
aatgggtcttcatttttcgcgatggaattgaaaaagaacgaatctttaaagaagatggaagggtgnnnnnnnntataccaaagtagatgagttgttgcgg |
228 |
Q |
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| T |
53193919 |
aatgggtcttctttttttgtgatgaaattgaaaaagaacgaatctttaaacaagatgaaaggtgaagaaaaaaaatatcaaagtggatgagttgttgcag |
53194018 |
T |
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| Q |
229 |
gaagaattttgattggtgagattagtgagaggaggacgtttcttggcagaggctgctaaaacttttccggcgttgttctctgatgttaaagcggtaacag |
328 |
Q |
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| T |
53194019 |
gaagaatttcgattggtgaggttagtgagaggaggacgtttcttggcagaggcggctaaaacttttccggtgttgttctctgatgttaaagcggtaacag |
53194118 |
T |
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| Q |
329 |
gtgggtgtcgtttcgccattgacgacgttgttgaagaagaaaacgatg |
376 |
Q |
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| T |
53194119 |
gtgggtgtcgttttgccattgacgacgttgttgaagacgaaaacgatg |
53194166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 37532944 - 37533061
Alignment:
| Q |
15 |
agcttgaagaagaattgcatggtgaaggttctttctttgtctttgcaactttagttacctacaaaattaacaacaacccaattccaaaatcgttataatc |
114 |
Q |
| |
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||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| | ||||||||| | | | ||||| ||| |||||||| |
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| T |
37532944 |
agcttgaagaagaattgcatgtcgaaagttctatctttgtctttgcaactttagttagttgcaaaattaaaacccaatagattcc---atcattataatc |
37533040 |
T |
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| Q |
115 |
acgcataaaattcaaatgggt |
135 |
Q |
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| T |
37533041 |
tcgcataaaattcaaatgggt |
37533061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 41762164 - 41762281
Alignment:
| Q |
15 |
agcttgaagaagaattgcatggtgaaggttctttctttgtctttgcaactttagttacctacaaaattaacaacaacccaattccaaaatcgttataatc |
114 |
Q |
| |
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||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| | ||||||||| | | | ||||| ||| |||||||| |
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| T |
41762164 |
agcttgaagaagaattgcatgtcgaaggttatatctttgtctttgcaactttagttagttgcaaaattaaaacccaatagattcc---atcattataatc |
41762260 |
T |
|
| Q |
115 |
acgcataaaattcaaatgggt |
135 |
Q |
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| T |
41762261 |
tcgcataaaattcaaatgggt |
41762281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 43754559 - 43754442
Alignment:
| Q |
15 |
agcttgaagaagaattgcatggtgaaggttctttctttgtctttgcaactttagttacctacaaaattaacaacaacccaattccaaaatcgttataatc |
114 |
Q |
| |
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||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| | ||||||||| | | | ||||| ||| |||||||| |
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| T |
43754559 |
agcttgaagaagaattgcatgtcgaatgttctatctttgtctttgcaactttagttagttgcaaaattaaaacccaatagattcc---atcattataatc |
43754463 |
T |
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| Q |
115 |
acgcataaaattcaaatgggt |
135 |
Q |
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|||||||||||||||||||| |
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| T |
43754462 |
tcgcataaaattcaaatgggt |
43754442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 48880387 - 48880504
Alignment:
| Q |
15 |
agcttgaagaagaattgcatggtgaaggttctttctttgtctttgcaactttagttacctacaaaattaacaacaacccaattccaaaatcgttataatc |
114 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| | ||||||||| | | | ||||| ||| |||||||| |
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| T |
48880387 |
agcttgaagaagaattgcatgtcgaatgttctatctttgtctttgcaactttagttagttgcaaaattaaaacccaatagattcc---atcattataatc |
48880483 |
T |
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| Q |
115 |
acgcataaaattcaaatgggt |
135 |
Q |
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|||||||||||||||||||| |
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| T |
48880484 |
tcgcataaaattcaaatgggt |
48880504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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