View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_high_9 (Length: 335)
Name: NF10742_high_9
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 33314350 - 33314545
Alignment:
| Q |
19 |
gtaaggaatcattgtgaatctagttactctattatgaattgaatcactactatgctattgcctttgaatcatttcacnnnnnnnntaccaagtattttgt |
118 |
Q |
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| T |
33314350 |
gtaaggaatcattgtgaatctagttactctattatgaattgaatcactactatgttattgcctttgaatcatttcacaaaaaaa-taccaagtattttgt |
33314448 |
T |
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| Q |
119 |
acacaagtttttagcataaaatgtactttggattgttccgttgagacttatttagggagtctatctagtaatctatttttacaattaaacttatctt |
215 |
Q |
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| T |
33314449 |
acacaagtttttagtataaaatgtactttggattgttccgttgagacttatttagggagtctaactagtaatccatttttacaattaaacctatctt |
33314545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 225 - 324
Target Start/End: Original strand, 33315966 - 33316065
Alignment:
| Q |
225 |
tttacattattctaaacttctctaaacactctctttcaaaccctagccattctctttgacataaactataatttcaatgttttttgttactacagttcat |
324 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |
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| T |
33315966 |
tttacattattctaaacttccccaaacactctctttcaaaccctagccattctctttgacataaactatcatttcagtgttctttgttactacagttcat |
33316065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 33314550 - 33314618
Alignment:
| Q |
248 |
aaacactctctttcaaaccctagccattctctttgacataaactataatttcaatgttttttgttacta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
33314550 |
aaacactctctttcaaaccctagccattctctttgacataaactataattttaatgttctttgttacta |
33314618 |
T |
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