View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_low_1 (Length: 579)
Name: NF10742_low_1
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 56 - 193
Target Start/End: Original strand, 26834777 - 26834914
Alignment:
| Q |
56 |
gtctcaagtggcattgcaaggagagaaggaacaatggtgtgttcatgaaagaatttaggttacctgagaatgcaaaagttgatgatgtcaaggcttcaat |
155 |
Q |
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| T |
26834777 |
gtctcaagtggcattgcaaggagagaaagaacaatggtgtgttcatgaaggaatttaggttaccggagaatgcaaaagttgatgatgtcaaggcttcaat |
26834876 |
T |
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| Q |
156 |
gcatgatggagtgttgagtataaaattggttaaggatg |
193 |
Q |
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| T |
26834877 |
gcatgatggagtgttgactataaaattggttaaggatg |
26834914 |
T |
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Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 26834983 - 26835060
Alignment:
| Q |
253 |
gatggtgaaggggtttctcacaaaggaattggacgttttgtttgttgcaaagcttagaacttttcatccaaatgtgtt |
330 |
Q |
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| T |
26834983 |
gatggtgaaggggtttctcacaaaggaattggacgttttgtttgttgcaaagcttagaacttttcatccaaatgtgtt |
26835060 |
T |
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