View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_low_10 (Length: 376)
Name: NF10742_low_10
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_10 |
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| [»] scaffold0133 (2 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 16782107 - 16782433
Alignment:
| Q |
15 |
atgaatcaaagttgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16782107 |
atgaatcaaagttgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatctattaaatcagtggatgt |
16782206 |
T |
|
| Q |
115 |
agtttttctgcaacttgtgaatattggttgctatagnnnnnnnn-tatcagtacatgacagtgaggaaaactacatgacagtgggnnnnnnncaagatca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16782207 |
agtttttctgcaacttgtgaatattggttgctatagaaaaaaaaatatcagtacatgacagtgaggaaaactacatgacagtgggaaaaaaacaagatca |
16782306 |
T |
|
| Q |
214 |
tgtccattcatttgctcagtgcctagaaaaattgtcctctttcaaaggtatggcttaattgttgataataactgttaaacggactagaatcacattccaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16782307 |
tgtccattcatttgctcagtgcctagaaaaattgttctctttcaaaggtatggcttaattgttgataataactgttaaacggactagaatcacattccaa |
16782406 |
T |
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| Q |
314 |
aaactagcataataaaaggtgagagtg |
340 |
Q |
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||||||||||||||||||||||||||| |
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| T |
16782407 |
aaactagcataataaaaggtgagagtg |
16782433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 325
Target Start/End: Original strand, 16839645 - 16839760
Alignment:
| Q |
211 |
tcatgtccattcatttgctcagtgcctagaaaaattgtcctctttcaaaggtatggcttaattgttgataataactgttaaacggactagaatcacattc |
310 |
Q |
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|||||||| || |||| |||||||| ||| || ||||| ||| ||||||||| |||| |||| |||| ||||| ||||||| ||| |||||| ||||| |
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| T |
16839645 |
tcatgtccgtttatttactcagtgcttaggaatattgttgtctgtcaaaggtagggctcaattattgagaataattgttaaatggagaagaatctcattc |
16839744 |
T |
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| Q |
311 |
caaaaa-ctagcataa |
325 |
Q |
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|||||| ||||||||| |
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| T |
16839745 |
caaaaatctagcataa |
16839760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 9509 - 9644
Alignment:
| Q |
15 |
atgaatcaaagttgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgt |
114 |
Q |
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||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9509 |
atgaatcaaagttgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgt |
9608 |
T |
|
| Q |
115 |
agtttttctgcaacttgtgaatattggttgctatag |
150 |
Q |
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|||| ||||||||| ||| || ||||| |||||||| |
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| T |
9609 |
agttcttctgcaacatgtcaaaattggctgctatag |
9644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 13857 - 13965
Alignment:
| Q |
15 |
atgaatcaaagttgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgt |
114 |
Q |
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||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13857 |
atgaatcaaagttgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgt |
13956 |
T |
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| Q |
115 |
agtttttct |
123 |
Q |
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|||| |||| |
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| T |
13957 |
agttcttct |
13965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 38938502 - 38938331
Alignment:
| Q |
28 |
gtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgtagtttttctgcaa |
127 |
Q |
| |
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|||| |||| |||||| ||||||||||||||||||||||||| || ||||||| |||||||||||| | |||||||||||||||||||||| |||||||| |
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| T |
38938502 |
gtttggattggagatg-ctttgctctaggaagatgaaatatgtgtagttattttttttcaaagattgtctattaaatcagtggatgtagttcttctgcaa |
38938404 |
T |
|
| Q |
128 |
cttgtgaatattggttgc--tatagnnnnnnnntatcagtacatgacagtgaggaaaactacatgacagtggg |
198 |
Q |
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||||| |||||||| ||| || || |||||||||||||||||| |||||||||||||| ||||| |
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| T |
38938403 |
cttgtcaatattggctgctgtagagagaaaaaaaatcagtacatgacagtgacgaaaactacatgactgtggg |
38938331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 38938277 - 38938237
Alignment:
| Q |
275 |
ttgataataactgttaaacgg-actagaatcacattccaaa |
314 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||| |
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| T |
38938277 |
ttgataataattgttaaacgggactagaatcacattccaaa |
38938237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 10169 - 10264
Alignment:
| Q |
55 |
ggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgtagtttttctgcaacttgtgaatattggttgctatag |
150 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| ||| || |||| |||||||| |
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| T |
10169 |
ggaagatgaaatatgcgttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttttgcaacatgtcaaaattgactgctatag |
10264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 11983167 - 11983113
Alignment:
| Q |
28 |
gtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgt |
82 |
Q |
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|||| |||| ||||||||||||||||| |||||||||||||| ||| |||||||| |
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| T |
11983167 |
gtttggattggagatgactttgctctatgaagatgaaatatgcgttattatttgt |
11983113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 11982865 - 11982816
Alignment:
| Q |
210 |
atcatgtccattcatttgctcagtgcctagaaaaattgtcctctttcaaa |
259 |
Q |
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|
||||||||||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
11982865 |
atcatgtccattcatttgctcagtgagcagaaacattgttctctttcaaa |
11982816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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