View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10742_low_12 (Length: 351)

Name: NF10742_low_12
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10742_low_12
NF10742_low_12
[»] chr4 (14 HSPs)
chr4 (1-334)||(48684262-48684587)
chr4 (1-108)||(36569368-36569476)
chr4 (57-119)||(19674287-19674349)
chr4 (48-100)||(37370278-37370330)
chr4 (55-101)||(52632901-52632947)
chr4 (48-101)||(12865264-12865317)
chr4 (1-101)||(32157424-32157525)
chr4 (48-101)||(48316188-48316241)
chr4 (48-111)||(23254983-23255047)
chr4 (48-100)||(45043380-45043432)
chr4 (58-99)||(42150261-42150302)
chr4 (48-100)||(42236941-42236994)
chr4 (48-97)||(47631175-47631224)
chr4 (48-84)||(54041975-54042011)
[»] chr7 (7 HSPs)
chr7 (4-326)||(47420802-47421127)
chr7 (48-100)||(2735953-2736005)
chr7 (1-100)||(33698538-33698638)
chr7 (55-101)||(43988197-43988243)
chr7 (48-98)||(33800408-33800459)
chr7 (57-119)||(35594253-35594315)
chr7 (56-96)||(4041551-4041591)
[»] chr2 (8 HSPs)
chr2 (2-100)||(5185741-5185840)
chr2 (48-94)||(16803354-16803400)
chr2 (48-94)||(16842637-16842683)
chr2 (58-99)||(9367988-9368029)
chr2 (48-111)||(27892624-27892688)
chr2 (1-99)||(40772089-40772189)
chr2 (48-94)||(7293125-7293171)
chr2 (56-101)||(39730947-39730992)
[»] chr5 (6 HSPs)
chr5 (3-99)||(6231239-6231337)
chr5 (48-101)||(28613379-28613432)
chr5 (1-113)||(12005518-12005632)
chr5 (3-94)||(1199585-1199677)
chr5 (48-119)||(37367279-37367350)
chr5 (57-113)||(34912065-34912122)
[»] chr1 (6 HSPs)
chr1 (1-99)||(6222435-6222535)
chr1 (56-101)||(35395311-35395356)
chr1 (48-94)||(17180005-17180051)
chr1 (48-101)||(4861520-4861573)
chr1 (66-99)||(10462465-10462498)
chr1 (48-95)||(37071045-37071093)
[»] chr8 (3 HSPs)
chr8 (1-84)||(13637741-13637825)
chr8 (1-84)||(13738154-13738238)
chr8 (51-113)||(11943089-11943152)
[»] chr6 (3 HSPs)
chr6 (48-101)||(30496421-30496475)
chr6 (48-110)||(18289898-18289961)
chr6 (50-100)||(24163503-24163553)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-101)||(5855-5956)
[»] chr3 (9 HSPs)
chr3 (1-101)||(49032835-49032936)
chr3 (1-84)||(2032384-2032468)
chr3 (1-84)||(6955938-6956022)
chr3 (57-101)||(33863425-33863469)
chr3 (21-84)||(55006978-55007042)
chr3 (55-101)||(47498456-47498503)
chr3 (56-94)||(46970129-46970167)
chr3 (48-96)||(12062706-12062754)
chr3 (46-90)||(53219154-53219197)
[»] scaffold0581 (1 HSPs)
scaffold0581 (55-102)||(8937-8985)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 48684587 - 48684262
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgtatggaagtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtga 100  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||||||          ||||||||||||||||||||||||| |||||||||||||||    
T  48684587 ggaaagaaagtgagaggaaagattgttgaaggaatgaaagtgtatggaa----------agtaagatgattttttagttgtttggtatgagtgaaagtga 48684498  T
Q  101 atgaaaagtgagaaaaaaggaatatatattacttagtaaatgacataatcacccttacataatataaatgtcatattttaatgaggtaataaatgtgcga 200  Q
    ||| |||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48684497 atggaaagtgagaggaaaggaatatatattactgagtaaatgacataatcacccttacataatataaatgtcatattttaatgaggtaataaatgtgcga 48684398  T
Q  201 ctata--tataatacatgtaaatttaaaataactactattacattattatttaaacgttgacttaattactaattgatttttgtacatgctgttcgcaag 298  Q
    |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48684397 ctatatatataatacatgtaaatttaaaataactattattacattattatttaaacgttgacttaattactaattgatttttgtacatgctgttcgcaag 48684298  T
Q  299 aacttaatcaactaaaacaaagaaaacagtaggagt 334  Q
    |||||||||||||||||||||||||| |||||||||    
T  48684297 aacttaatcaactaaaacaaagaaaatagtaggagt 48684262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 36569368 - 36569476
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgtatggaag-tgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtg 99  Q
    ||||||||||||| |||||||| |||| ||| ||||||| || || |||| | ||| ||||||||||||||| |||||||||||||||||||||||||||    
T  36569368 ggaaagaaagtgaaaggaacgaatgtttaaggaatgaaagtggatagaagataaatagaaagtaagatgattgtttagttgtttgatatgagtgaaagtg 36569467  T
Q  100 aatgaaaag 108  Q
    || ||||||    
T  36569468 aaagaaaag 36569476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 19674287 - 19674349
Alignment:
Q  57 gaaagtaagatgattttttagttgtttgatatgagtgaaagtgaatgaaaagtgagaaaaaag 119  Q
    ||||||| |||||||||||||||||||| ||| |||||||| ||||| |||||||||| ||||    
T  19674287 gaaagtaggatgattttttagttgtttggtattagtgaaagagaatggaaagtgagaagaaag 19674349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 37370330 - 37370278
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtga 100  Q
    |||||| |||||||| ||||||||||||||||||||||||| | |||||||||    
T  37370330 aagtgagtggaaagtgagatgattttttagttgtttgatataaatgaaagtga 37370278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 52632947 - 52632901
Alignment:
Q  55 tggaaagtaagatgattttttagttgtttgatatgagtgaaagtgaa 101  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  52632947 tggaaagtgagatgattttttagttgtttggtattagtgaaagtgaa 52632901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 12865317 - 12865264
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtgaa 101  Q
    |||||| ||||||||  |||||||||||||||||||| ||| ||||||||||||    
T  12865317 aagtgagtggaaagtttgatgattttttagttgtttggtattagtgaaagtgaa 12865264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32157525 - 32157424
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgtatgg-aagtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtg 99  Q
    ||||||||||| | ||||| || |||| ||| ||||||| ||  ||| ||| || |||||||| ||||||||||||  ||||||| ||||||||||||||    
T  32157525 ggaaagaaagtaaaaggaaagaatgtttaaggaatgaaagtgagtggtaagagagtggaaagttagatgattttttgattgtttggtatgagtgaaagtg 32157426  T
Q  100 aa 101  Q
    ||    
T  32157425 aa 32157424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 48316188 - 48316241
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtgaa 101  Q
    |||||| | |||||| ||||||||||||||||||||| ||| ||||||||||||    
T  48316188 aagtgagtagaaagtgagatgattttttagttgtttggtattagtgaaagtgaa 48316241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 23255047 - 23254983
Alignment:
Q  48 aagtgaatggaaagtaagatgatttt-ttagttgtttgatatgagtgaaagtgaatgaaaagtga 111  Q
    ||||||||||||||||||||||||||  |||||| ||| | ||||||||||||| | ||||||||    
T  23255047 aagtgaatggaaagtaagatgattttcatagttgcttggtttgagtgaaagtgattaaaaagtga 23254983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 45043380 - 45043432
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtga 100  Q
    ||||||||||||||| |||||||| ||||||||||||  |||| |||||||||    
T  45043380 aagtgaatggaaagtgagatgattgtttagttgtttggaatgaatgaaagtga 45043432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 42150302 - 42150261
Alignment:
Q  58 aaagtaagatgattttttagttgtttgatatgagtgaaagtg 99  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||    
T  42150302 aaagtgagatgattttttagttgtttggtatgaatgaaagtg 42150261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 42236941 - 42236994
Alignment:
Q  48 aagtgaatggaaagtaagatgatt-ttttagttgtttgatatgagtgaaagtga 100  Q
    ||||||||||||||| |||||||| |||| |||||||| ||||| |||||||||    
T  42236941 aagtgaatggaaagtgagatgattatttttgttgtttggtatgaatgaaagtga 42236994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 47631175 - 47631224
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaag 97  Q
    ||||||||| |||||||||||||| |||||||||||| | ||| ||||||    
T  47631175 aagtgaatgaaaagtaagatgattatttagttgtttggtttgaatgaaag 47631224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 54041975 - 54042011
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttg 84  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  54041975 aagtgaatggaaagtgagatgattgtttagttgtttg 54042011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 47421127 - 47420802
Alignment:
Q  4 aagaaagtgagaggaacgattgttgaagaaatgaaaatgtatggaa-gtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtgaat 102  Q
    |||||| ||||||||| ||||||||||| |||| || ||||| ||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  47421127 aagaaaatgagaggaaagattgttgaaggaatggaagtgtatagaaagtgaatggaaagtgagatgattttttagttgtttggtatgagtgaaagtgaat 47421028  T
Q  103 gaaaagtgagaaaaaaggaatatatattacttagtaaatgacataatcacccttacataatataaatgtcatattttaatgaggtaataaatgtgcgact 202  Q
     ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47421027 caaaagtgagaggaaagaaatatatattacttagtaaatgacataatcacccttacataatataaatgtcatattttaatgaggtaataaatgtgcgact 47420928  T
Q  203 ata--tataatacatgtaaatttaaaataactactattacattattatttaaacgttgacttaattactaattgatttttgtacatgctgttcgcaagaa 300  Q
    |||  ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  47420927 atatatataataaatgtaaatttaaaataagtattattacattattatttaaacgttgacttaattactaattgatttttgtacatgttattcgcaagaa 47420828  T
Q  301 cttaatcaactaaaacaaagaaaaca 326  Q
    ||||||||||||||||||||||||||    
T  47420827 cttaatcaactaaaacaaagaaaaca 47420802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 2735953 - 2736005
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtga 100  Q
    |||||| |||||||| |||||||||||| |||||||| |||||||||||||||    
T  2735953 aagtgagtggaaagttagatgattttttggttgtttggtatgagtgaaagtga 2736005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 33698638 - 33698538
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgtatggaa-gtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtg 99  Q
    ||||||| ||| ||||||| |||| |||||| ||||||| ||  | ||| ||||||||||||| ||||||| ||||||||||||| ||| | ||||||||    
T  33698638 ggaaagatagtaagaggaaagattattgaaggaatgaaagtgagtagaatgtgaatggaaagtgagatgatattttagttgtttggtataaatgaaagtg 33698539  T
Q  100 a 100  Q
    |    
T  33698538 a 33698538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 43988197 - 43988243
Alignment:
Q  55 tggaaagtaagatgattttttagttgtttgatatgagtgaaagtgaa 101  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  43988197 tggaaagtgagatgattttttagttgtttggtattagtgaaagtgaa 43988243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 33800408 - 33800459
Alignment:
Q  48 aagtgaatggaaagtaagatgatt-ttttagttgtttgatatgagtgaaagt 98  Q
    ||||||||||||||| |||||||| ||||||||||||| || ||||||||||    
T  33800408 aagtgaatggaaagtgagatgattgttttagttgtttgttaggagtgaaagt 33800459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 35594315 - 35594253
Alignment:
Q  57 gaaagtaagatgattttttagttgtttgatatgagtgaaagtgaatgaaaagtgagaaaaaag 119  Q
    ||||||| ||||||| |||||||||||| ||| | |||||||||||| ||||| |||| ||||    
T  35594315 gaaagtaggatgattatttagttgtttggtattaatgaaagtgaatggaaagtaagaagaaag 35594253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 4041591 - 4041551
Alignment:
Q  56 ggaaagtaagatgattttttagttgtttgatatgagtgaaa 96  Q
    ||||||||||||||||||| |||||||||| || |||||||    
T  4041591 ggaaagtaagatgatttttaagttgtttgaaataagtgaaa 4041551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 5185741 - 5185840
Alignment:
Q  2 gaaagaaagtgagaggaacgattgttgaagaaatgaaaatgtatggaag-tgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtga 100  Q
    |||||||||||| ||||| || |||| ||| ||||||| || || |||| | ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5185741 gaaagaaagtgaaaggaaagaatgtttaaggaatgaaagtggatagaagataaatggaaagtaagatgattgtttagttgtttgatatgagtgaaagtga 5185840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 16803354 - 16803400
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtga 94  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||    
T  16803354 aagtgaatggaaagtgtgatgattttttagttgtttggtatgagtga 16803400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 16842637 - 16842683
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtga 94  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||    
T  16842637 aagtgaatggaaagtgtgatgattttttagttgtttggtatgagtga 16842683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 9368029 - 9367988
Alignment:
Q  58 aaagtaagatgattttttagttgtttgatatgagtgaaagtg 99  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  9368029 aaagtgagatgattttttagttgtttggtatgagtgaaagtg 9367988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 27892688 - 27892624
Alignment:
Q  48 aagtgaatggaaagtaagatgatttt-ttagttgtttgatatgagtgaaagtgaatgaaaagtga 111  Q
    ||||||||||||||||||||||||||  |||||||||| | || |||||||||| | ||||||||    
T  27892688 aagtgaatggaaagtaagatgattttcatagttgtttggtttgtgtgaaagtgattaaaaagtga 27892624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 40772189 - 40772089
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgta-tggaagtgaatggaaagtaagatgatt-ttttagttgtttgatatgagtgaaagt 98  Q
    ||||||||||| ||||||| ||||||| ||| ||||||| || |  | ||||||||||||||| |||||||| |||| |||||||  || ||||||||||    
T  40772189 ggaaagaaagtaagaggaaagattgttaaaggaatgaaagtgaagagaaagtgaatggaaagtgagatgattattttggttgtttattaggagtgaaagt 40772090  T
Q  99 g 99  Q
    |    
T  40772089 g 40772089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 7293125 - 7293171
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtga 94  Q
    |||||| ||||||||  |||||||||||||||||||| |||||||||    
T  7293125 aagtgagtggaaagtgcgatgattttttagttgtttggtatgagtga 7293171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 39730947 - 39730992
Alignment:
Q  56 ggaaagtaagatgattttttagttgtttgatatgagtgaaagtgaa 101  Q
    |||||||||||||||||||| |||||||| ||||||| | ||||||    
T  39730947 ggaaagtaagatgattttttggttgtttggtatgagtaatagtgaa 39730992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 6231337 - 6231239
Alignment:
Q  3 aaagaaagtgagaggaacgattgttgaagaaatgaaaatgtat-ggaagtgaatggaaagtaagatga-ttttttagttgtttgatatgagtgaaagtg 99  Q
    ||||||||| ||||||| ||||||||||| ||||||||||  | | ||||||||||||||| |||||| |||||| |||||||| ||||||||||||||    
T  6231337 aaagaaagtaagaggaaagattgttgaaggaatgaaaatgagtagaaagtgaatggaaagttagatgatttttttggttgtttggtatgagtgaaagtg 6231239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 28613432 - 28613379
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtgaa 101  Q
    ||||||||| ||||||||||||||||||||||||||| |||||  |||||||||    
T  28613432 aagtgaatgaaaagtaagatgattttttagttgtttggtatgacagaaagtgaa 28613379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 12005518 - 12005632
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgtatggaa-gtgaatggaaagtaagatgatttt-ttagttgtttgatatgagtgaaagt 98  Q
    ||||||| ||| ||||||| ||||||| ||| ||||||| ||  | ||| ||||||||||||| ||| |||||| ||||||||||| ||| |||||||||    
T  12005518 ggaaagatagtaagaggaaagattgttaaaggaatgaaagtgagtagaaagtgaatggaaagttagacgatttttttagttgtttggtataagtgaaagt 12005617  T
Q  99 gaatgaaaagtgaga 113  Q
    | ||| | |||||||    
T  12005618 gcatggatagtgaga 12005632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 1199677 - 1199585
Alignment:
Q  3 aaagaaagtgagaggaacgattgttgaagaaatgaaaatgtat-ggaagtgaatggaaagtaagatgattttttagttgtttgatatgagtga 94  Q
    ||||||||||| ||||| ||||||||||| ||||||| ||  | | |||||| |||||||| | |||||| |||||||||||| | |||||||    
T  1199677 aaagaaagtgaaaggaaagattgttgaaggaatgaaagtgagtagaaagtgagtggaaagtgaaatgattatttagttgtttggtttgagtga 1199585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 37367350 - 37367279
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtgaatgaaaagtgagaaaaaag 119  Q
    |||||||  ||||||| ||| ||| |||| ||||||||||| | |||||||||||| ||||| |||||||||    
T  37367350 aagtgaaatgaaagtaggataattatttaattgtttgatattaatgaaagtgaatggaaagtaagaaaaaag 37367279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 34912065 - 34912122
Alignment:
Q  57 gaaagtaagatgatttt-ttagttgtttgatatgagtgaaagtgaatgaaaagtgaga 113  Q
    ||||||||||||||||| ||||||||||| ||  |||||| ||||||| |||||||||    
T  34912065 gaaagtaagatgatttttttagttgtttggtaatagtgaaggtgaatggaaagtgaga 34912122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 6222535 - 6222435
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgta-tggaagtgaatggaaagtaagatgatt-ttttagttgtttgatatgagtgaaagt 98  Q
    ||||||||||| ||||||| ||||||| ||||||||||| || |  | |||||| |||||||| |||||||| ||||||||||||| || ||||||||||    
T  6222535 ggaaagaaagtaagaggaaagattgttaaagaaatgaaagtggagagaaagtgattggaaagtgagatgattgttttagttgtttgttaggagtgaaagt 6222436  T
Q  99 g 99  Q
    |    
T  6222435 g 6222435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 35395311 - 35395356
Alignment:
Q  56 ggaaagtaagatgattttttagttgtttgatatgagtgaaagtgaa 101  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||    
T  35395311 ggaaagtaagatgattttttagttgtttggtatgagtgatagtgaa 35395356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 17180005 - 17180051
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtga 94  Q
    |||||||||||||||  |||||||||||||||||||| ||| |||||    
T  17180005 aagtgaatggaaagtgtgatgattttttagttgtttggtataagtga 17180051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 4861573 - 4861520
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtgaa 101  Q
    |||||||| |||||| |||||||| |||||||||||| ||| | ||||||||||    
T  4861573 aagtgaatagaaagtgagatgattgtttagttgtttgttataaatgaaagtgaa 4861520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 10462498 - 10462465
Alignment:
Q  66 atgattttttagttgtttgatatgagtgaaagtg 99  Q
    ||||||||||||||||||| ||||||||||||||    
T  10462498 atgattttttagttgtttggtatgagtgaaagtg 10462465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 37071045 - 37071093
Alignment:
Q  48 aagtgaatggaaagtaagatgatttt-ttagttgtttgatatgagtgaa 95  Q
    ||||||||||||||||||||||||||  |||||||||| | ||||||||    
T  37071045 aagtgaatggaaagtaagatgattttcatagttgtttggtttgagtgaa 37071093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13637825 - 13637741
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgtatggaa-gtgaatggaaagtaagatgattttttagttgtttg 84  Q
    ||||||| ||| ||||||| ||||||||||| ||||||| ||  | ||| ||||||||||||| |||||||| ||||||||||||    
T  13637825 ggaaagatagtaagaggaaagattgttgaaggaatgaaagtgggtagaaagtgaatggaaagtgagatgattatttagttgtttg 13637741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13738238 - 13738154
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgtatggaa-gtgaatggaaagtaagatgattttttagttgtttg 84  Q
    ||||||| ||| ||||||| ||||||||||| ||||||| ||  | ||| ||||||||||||| |||||||| ||||||||||||    
T  13738238 ggaaagatagtaagaggaaagattgttgaaggaatgaaagtgggtagaaagtgaatggaaagtgagatgattatttagttgtttg 13738154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 11943089 - 11943152
Alignment:
Q  51 tgaatggaaagtaagatgatttt-ttagttgtttgatatgagtgaaagtgaatgaaaagtgaga 113  Q
    |||||||||||| |||||||||| ||||||||||| ||| |||||||||| ||| | |||||||    
T  11943089 tgaatggaaagttagatgatttttttagttgtttggtataagtgaaagtgcatggatagtgaga 11943152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 30496421 - 30496475
Alignment:
Q  48 aagtgaatggaaagtaagatgatt-ttttagttgtttgatatgagtgaaagtgaa 101  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||    
T  30496421 aagtgaatggaaagtgagatgattgttttagttgtttggtatgaatgaaagtgaa 30496475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 18289898 - 18289961
Alignment:
Q  48 aagtgaatggaaagtaagatgatttt-ttagttgtttgatatgagtgaaagtgaatgaaaagtg 110  Q
    ||||||||| ||||||||||||||||  |||||||||| | ||||||||||||| | |||||||    
T  18289898 aagtgaatgaaaagtaagatgattttcatagttgtttggtttgagtgaaagtgattaaaaagtg 18289961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 24163503 - 24163553
Alignment:
Q  50 gtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtga 100  Q
    ||||||||||||| |||||||| ||||||||||||  |||| |||||||||    
T  24163503 gtgaatggaaagtgagatgattgtttagttgtttggaatgaatgaaagtga 24163553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 5956 - 5855
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgtatggaa-gtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtg 99  Q
    ||||||||||| |  |||| || |||| ||||||||||| || |||||| | || | ||||||||||||||||||| |||||||| ||| ||||| ||||    
T  5956 ggaaagaaagtaaatggaaagaatgtttaagaaatgaaagtgaatggaaagagagtagaaagtaagatgatttttttgttgtttggtataagtgatagtg 5857  T
Q  100 aa 101  Q
    ||    
T  5856 aa 5855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 49032936 - 49032835
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgtatggaa-gtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaagtg 99  Q
    ||||||||||  ||||||| || |||| ||| ||||||| || || ||| |||| |||||||| |||||||| |||||||||||| || | |||||||||    
T  49032936 ggaaagaaagaaagaggaaagaatgttaaaggaatgaaagtgaatagaaagtgagtggaaagtgagatgattgtttagttgtttggtaggggtgaaagtg 49032837  T
Q  100 aa 101  Q
    ||    
T  49032836 aa 49032835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2032468 - 2032384
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgtatggaa-gtgaatggaaagtaagatgattttttagttgtttg 84  Q
    ||||||| ||| | ||||| ||||||||||| ||||||||||  | ||| ||||||||||| | |||||||| ||||||||||||    
T  2032468 ggaaagatagtaaaaggaaagattgttgaaggaatgaaaatgagtagaaagtgaatggaaaatgagatgattatttagttgtttg 2032384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 6956022 - 6955938
Alignment:
Q  1 ggaaagaaagtgagaggaacgattgttgaagaaatgaaaatgtatggaa-gtgaatggaaagtaagatgattttttagttgtttg 84  Q
    ||||||| ||| ||||||| ||||||||||| ||||||| ||  | ||| ||||||||||||  |||||||| ||||||||||||    
T  6956022 ggaaagatagtaagaggaaagattgttgaaggaatgaaagtgagtagaaagtgaatggaaagagagatgattatttagttgtttg 6955938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 33863469 - 33863425
Alignment:
Q  57 gaaagtaagatgattttttagttgtttgatatgagtgaaagtgaa 101  Q
    |||||| |||||||| |||||||||||||||||| ||||||||||    
T  33863469 gaaagtgagatgattgtttagttgtttgatatgaatgaaagtgaa 33863425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 55007042 - 55006978
Alignment:
Q  21 gattgttgaagaaatgaaaatgtatggaa-gtgaatggaaagtaagatgattttttagttgtttg 84  Q
    ||||||||||| ||||||||||  | ||| ||||||||||||| |||||||| ||||||||||||    
T  55007042 gattgttgaaggaatgaaaatgagtagaaagtgaatggaaagtgagatgattatttagttgtttg 55006978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 47498503 - 47498456
Alignment:
Q  55 tggaaagtaagatgattt-tttagttgtttgatatgagtgaaagtgaa 101  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  47498503 tggaaagtgagatgatttatttagttgtttgatataagtgaaagtgaa 47498456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 46970129 - 46970167
Alignment:
Q  56 ggaaagtaagatgattttttagttgtttgatatgagtga 94  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  46970129 ggaaagtaagatgattttttggttgtttggtatgagtga 46970167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 12062754 - 12062706
Alignment:
Q  48 aagtgaatggaaagtaagatgattttttagttgtttgatatgagtgaaa 96  Q
    ||||||| |||||||||||||||||||  ||||||||| || |||||||    
T  12062754 aagtgaaaggaaagtaagatgatttttgggttgtttgaaataagtgaaa 12062706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 53219154 - 53219197
Alignment:
Q  46 ggaagtgaatggaaagtaagatgattttttagttgtttgatatga 90  Q
    ||||||||||| |||||  ||||||||||||||||||||||||||    
T  53219154 ggaagtgaatg-aaagtttgatgattttttagttgtttgatatga 53219197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 8937 - 8985
Alignment:
Q  55 tggaaagtaagatgatt-ttttagttgtttgatatgagtgaaagtgaat 102  Q
    |||||||| | |||||| ||||||| |||||||||||||||||||||||    
T  8937 tggaaagtgaaatgattgttttagtagtttgatatgagtgaaagtgaat 8985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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