View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_low_13 (Length: 348)
Name: NF10742_low_13
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 46047068 - 46046756
Alignment:
| Q |
20 |
cctcatggaaccggattttctaatgataatgacgaaagtcatgaaacagataacagttttgctgtgcttgttccttgttatggatacagttacggtgcca |
119 |
Q |
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| T |
46047068 |
cctcatggaaccggattttctaatgataatgacgaaagtcatgaaacagataacagttttgctgtgcttgttccttgttatggatacaattacggtgcca |
46046969 |
T |
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| Q |
120 |
tgttggaggagggtcctaaaagcaacttactaaacaatgttgggaacttctcatatggtaaggctaaactaaaccactaagatagaattagaaataaatt |
219 |
Q |
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| T |
46046968 |
tgttggaggagggtcctaaaagcaacgtactaaacaatgttgggaacttctcatatggtaaggctaaactaaaccactaagatagaattagaaataaatt |
46046869 |
T |
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| Q |
220 |
ggattgctagataaagtgttgatgttaatgtttctgttagaaataaatttggtgctttctgttttctcnnnnnnnnnnnnnncttgagtggtaaaatgct |
319 |
Q |
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| T |
46046868 |
ggattgctagataaag------tgttaatgtttctgttagaaataaatttggtgctttctgttttctctttttttattttttcttgagtggtaaaatgct |
46046775 |
T |
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| Q |
320 |
aatgtgtatggttcctttg |
338 |
Q |
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||||||||||||||||||| |
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| T |
46046774 |
aatgtgtatggttcctttg |
46046756 |
T |
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