View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_low_17 (Length: 284)
Name: NF10742_low_17
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 46959764 - 46960024
Alignment:
| Q |
16 |
tattgctcaattattattggattggacacattttccaccacgatatcctgaaatgtgatattggaggcaagaccatgcccaccctaaagaaaatttaact |
115 |
Q |
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| T |
46959764 |
tattgatcaattattattggattggacacattttccatcacgatatcctgaaatgtgatattggaggcaagaccatgcccaccctaaagaaaatttaact |
46959863 |
T |
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| Q |
116 |
tgactcaatcaaattgaacattactgggtgacatttaatgagaatgaaaatgctaaggttaccaacttacctgccatgttttgattctcagcccattttt |
215 |
Q |
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| T |
46959864 |
tgactcaatcaaattgaacattactgggtgacatttaatgagaatgaaaatgctaaggttaccaacttacctgccatgttttgattctcagcccattttt |
46959963 |
T |
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| Q |
216 |
cgtgttcgtaagataagctcc--atatacatttacattttcaatcttctcccatgcctttg |
274 |
Q |
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| T |
46959964 |
cgtgttcgtaagataagctccatatatacatttacattttcaatcttctcccatgcctttg |
46960024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 44522391 - 44522137
Alignment:
| Q |
16 |
tattgctcaattattattggattggacacattttccaccacgatatcctgaaatgtgatattggaggcaagaccatgcccaccctaaagaaaatttaact |
115 |
Q |
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| T |
44522391 |
tattgatctattattattggattggacacattttccattaagatattctggaatgtgatcttggaggcaaaaccactcccaccctaaagaaaatttggct |
44522292 |
T |
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| Q |
116 |
tgactcaatcaaattgaacattactgggtgacatttaatgagaatgaaaatgctaaggttac----caacttacctgccatgttttgattctcagcccat |
211 |
Q |
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| T |
44522291 |
cgactcaatagacttg-tcatcactaggtgaaatagaatgagaatgaaaatgatacggttacgaagaaagttacctgccatgttttgattctcaccccat |
44522193 |
T |
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| Q |
212 |
ttttcgtgttcgtaagataagctccatatacatttacattttcaatcttctcccat |
267 |
Q |
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| T |
44522192 |
tatcagtgttgtaaagataagctccatcaacaattacattttgaatcttctcccat |
44522137 |
T |
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