View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_low_2 (Length: 485)
Name: NF10742_low_2
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 95 - 469
Target Start/End: Complemental strand, 24566643 - 24566269
Alignment:
| Q |
95 |
cataacaagttaccttctttatcttatggaagtatccatcacgtgaacatatttgatttgacaattgacgggtaacagatatggacaagatacgatttat |
194 |
Q |
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| T |
24566643 |
cataacaagttaccttctttatcttatggaagtatccatcacgtgaacatatttgatttgacaattgacgggtaacagatatggacaagatacgatttat |
24566544 |
T |
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| Q |
195 |
gaaattacgatcacttgaattgatgaaactgaattttatcaagttgtttttctgtgtgtttataatcaatataattgacatgttcaattaacccactcga |
294 |
Q |
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| T |
24566543 |
gaaattatgatcacttgaattgatgaaactgaattttatcaagttgttttcctgtgtgtttataatcaatataattgacatgttcaattaacccactcga |
24566444 |
T |
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| Q |
295 |
gcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtac |
394 |
Q |
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| T |
24566443 |
gcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtac |
24566344 |
T |
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| Q |
395 |
taaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatcaagcatgtatcacgagtgtag |
469 |
Q |
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| T |
24566343 |
taaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatcaagcatgtatcacgagtgtag |
24566269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 315 - 469
Target Start/End: Original strand, 45532545 - 45532701
Alignment:
| Q |
315 |
cttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgat |
414 |
Q |
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| T |
45532545 |
cttctgcataatatgtggattggatatgtattttaaaaaattatttataatttgagaatgagaaaggtaaacaattgaactaaaaaagtttctctgtgat |
45532644 |
T |
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| Q |
415 |
taaatgtttctttcatgca--atagtctttcttatcaagcatgtatcacgagtgtag |
469 |
Q |
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| T |
45532645 |
gaaatgcttctttcatgtattagagactttcatatcaagcatgtatcacgaatgtag |
45532701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 253 - 437
Target Start/End: Original strand, 44335247 - 44335431
Alignment:
| Q |
253 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
352 |
Q |
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| T |
44335247 |
tttaaaatcaatataaataatatattcaattaaatcactccagcacctacattttatgatgtcttatgcatgatatgtgaatcagatgaatatttgcaaa |
44335346 |
T |
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| Q |
353 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag |
437 |
Q |
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| T |
44335347 |
aactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatag |
44335431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 253 - 437
Target Start/End: Complemental strand, 44339720 - 44339536
Alignment:
| Q |
253 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
352 |
Q |
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|||| ||||||||||| | | || ||||||||| ||||| |||||| ||||| || ||||||| ||| ||||||| || ||||| |||||||||| |
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| T |
44339720 |
tttaaaatcaatataaataatatattcaattaaatcactccagcaccaacattttatgctgtcttctacatgatatgtgaatcagatggatatttgcaaa |
44339621 |
T |
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| Q |
353 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag |
437 |
Q |
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| T |
44339620 |
aactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatag |
44339536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 45532459 - 45532540
Alignment:
| Q |
204 |
atcacttgaattgatgaaactgaattttatcaagttgtttttctgtgtg-tttataatcaatataattgacatgttcaatta |
284 |
Q |
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| T |
45532459 |
atcacttgaatttatgaaactgaattttatcaagtttttttcctgtgtgttttaaaatcaatctaattgacatgttcaatta |
45532540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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