View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_low_20 (Length: 274)
Name: NF10742_low_20
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 14271147 - 14270905
Alignment:
| Q |
18 |
gtatcaaacttgttaagttacatattttacgcaacatataacatgaaaccatattaattatcatcacgttataatcttttaaccatgtcttctacttcat |
117 |
Q |
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| T |
14271147 |
gtatcaaacttgtta-gttacatatttcacacaacatataacatgaaaccatattaattatcatcacgttataatcttttaaccatgtcttctacttcat |
14271049 |
T |
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| Q |
118 |
catggctaacttctccttcatgcacccttttacctatacattcatcaaacctcattcttcaatggttaaggttcattttcctatctccatgtcctcagag |
217 |
Q |
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| T |
14271048 |
catggctaacttctccttcatgcacccttttacctatacattcatcaaacctcattcttcaatggttaaggttcattttccgatctccatgtcctcagag |
14270949 |
T |
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| Q |
218 |
gcttcttctttcttctcttgattccttgtttttgcactccctct |
261 |
Q |
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| T |
14270948 |
gcttcttctttcttctcttgattccttgtttttgctctccctct |
14270905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 105 - 261
Target Start/End: Complemental strand, 14283849 - 14283681
Alignment:
| Q |
105 |
tcttctacttcatcatggctaacttctccttcatgcacccttttacctatacattcatc-------aaacc-----tcattcttcaatggttaaggttca |
192 |
Q |
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| T |
14283849 |
tcttcttcttctgcatggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggttaaggttca |
14283750 |
T |
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| Q |
193 |
ttttcctatctccatgtcctcagaggcttcttctttcttctcttgattccttgtttttgcactccctct |
261 |
Q |
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| T |
14283749 |
ttttcctatctccttgtcctcagagacttcttctttctgctcttgattccttgtttttgctctccctct |
14283681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 105 - 261
Target Start/End: Complemental strand, 14305607 - 14305439
Alignment:
| Q |
105 |
tcttctacttcatcatggctaacttctccttcatgcacccttttacctatacattcatc-------aaacc-----tcattcttcaatggttaaggttca |
192 |
Q |
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| T |
14305607 |
tcttctacttctgcatggctaacttctccttcatgcacccttttacctttacattcatcttcttctacaccacaattcattcttcaatggttaaggttca |
14305508 |
T |
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| Q |
193 |
ttttcctatctccatgtcctcagaggcttcttctttcttctcttgattccttgtttttgcactccctct |
261 |
Q |
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| T |
14305507 |
ttttcctatctccttgtcctcagagacttctactttctgctcttgattccttgtttttgctctccctct |
14305439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 252
Target Start/End: Complemental strand, 14322040 - 14321839
Alignment:
| Q |
60 |
atgaaaccatattaattatcatcacgttataatcttttaaccatgtcttctacttcatcatggctaacttctccttcatgcacccttttacctatacatt |
159 |
Q |
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| T |
14322040 |
atgaaaccttatcagttttcatcacataataatcttttaacaatgtct---acttcttcatggctaacttctccttcatgcacccttttacctgtagatt |
14321944 |
T |
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| Q |
160 |
catc------------aaacctcattcttcaatggttaaggttcattttcctatctccatgtcctcagaggcttcttctttcttctcttgattccttgtt |
247 |
Q |
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| T |
14321943 |
catcttcctctacaccagaactcataattcaatggttaaggttcattttgctatctccatgtcctcagagacttcttgtttctgctcttgattccttgtt |
14321844 |
T |
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| Q |
248 |
tttgc |
252 |
Q |
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| T |
14321843 |
tttgc |
14321839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 25886679 - 25886500
Alignment:
| Q |
94 |
ttttaaccatgtcttctacttcatcatggctaacttctccttcatgcacccttttacctatacattcat------------caaacctcattcttcaatg |
181 |
Q |
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| T |
25886679 |
ttttaaccatgtcttcttcttcttcatggctaacttctccttcatgcacccttttacctatagattcatcttcctctacaccacaactcatacttcaatg |
25886580 |
T |
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| Q |
182 |
gttaaggttcattttcctatctccatgtcctcagaggcttcttctttcttctcttgattccttgtttttgcactccctct |
261 |
Q |
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| T |
25886579 |
gttaacctttcttttcctatctccatgtcctcaaagacttctcctttctgctcttgattccttgtttttgctctccctct |
25886500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 44350525 - 44350468
Alignment:
| Q |
93 |
cttttaaccatgtcttctacttcatcatggctaacttctccttcatgcacccttttaccta |
153 |
Q |
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| T |
44350525 |
cttttaaccatgtcttcttcttcat---ggctaacttctccttcatgcacccttttaccta |
44350468 |
T |
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