View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10742_low_23 (Length: 251)

Name: NF10742_low_23
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10742_low_23
NF10742_low_23
[»] scaffold0386 (2 HSPs)
scaffold0386 (119-173)||(1279-1333)
scaffold0386 (118-168)||(691-741)
[»] chr4 (5 HSPs)
chr4 (119-173)||(33878620-33878674)
chr4 (118-168)||(33879203-33879253)
chr4 (18-68)||(46550626-46550676)
chr4 (18-64)||(47541735-47541781)
chr4 (20-62)||(47732466-47732508)
[»] chr5 (12 HSPs)
chr5 (123-173)||(13869240-13869290)
chr5 (123-173)||(27640875-27640925)
chr5 (119-168)||(13869825-13869874)
chr5 (20-63)||(36442660-36442703)
chr5 (119-168)||(27641429-27641478)
chr5 (18-62)||(10719883-10719927)
chr5 (18-65)||(3454387-3454434)
chr5 (18-64)||(16778273-16778319)
chr5 (19-61)||(21239003-21239045)
chr5 (21-62)||(20654461-20654502)
chr5 (18-62)||(23145929-23145973)
chr5 (18-62)||(37872129-37872173)
[»] chr8 (10 HSPs)
chr8 (18-63)||(30208335-30208380)
chr8 (119-168)||(38460880-38460929)
chr8 (119-173)||(38460427-38460481)
chr8 (21-61)||(5594922-5594962)
chr8 (18-62)||(39401955-39401999)
chr8 (18-62)||(40719821-40719865)
chr8 (18-64)||(1162043-1162089)
chr8 (18-62)||(34173559-34173603)
chr8 (18-62)||(34514581-34514625)
chr8 (18-65)||(35179296-35179341)
[»] chr3 (8 HSPs)
chr3 (18-62)||(25199079-25199123)
chr3 (19-62)||(22220346-22220389)
chr3 (119-173)||(49851417-49851471)
chr3 (119-168)||(49850835-49850884)
chr3 (19-63)||(2008537-2008581)
chr3 (21-61)||(22831103-22831143)
chr3 (18-68)||(45805449-45805499)
chr3 (18-63)||(1994780-1994825)
[»] chr2 (6 HSPs)
chr2 (18-62)||(3870164-3870208)
chr2 (18-62)||(34480055-34480099)
chr2 (19-62)||(36400993-36401036)
chr2 (18-62)||(30706078-30706122)
chr2 (18-63)||(37721585-37721630)
chr2 (18-62)||(9009119-9009163)
[»] chr1 (6 HSPs)
chr1 (18-71)||(24241614-24241667)
chr1 (20-64)||(34773345-34773389)
chr1 (21-62)||(38745959-38746000)
chr1 (22-62)||(8971569-8971609)
chr1 (18-62)||(41942916-41942960)
chr1 (18-62)||(16253166-16253210)
[»] scaffold0095 (1 HSPs)
scaffold0095 (18-62)||(35503-35547)
[»] chr6 (1 HSPs)
chr6 (20-60)||(17852650-17852690)
[»] chr7 (5 HSPs)
chr7 (18-64)||(8541565-8541611)
chr7 (126-173)||(29735710-29735759)
chr7 (119-168)||(29735117-29735166)
chr7 (18-62)||(30783412-30783456)
chr7 (18-62)||(34998665-34998709)
[»] scaffold0288 (1 HSPs)
scaffold0288 (18-62)||(17977-18022)


Alignment Details
Target: scaffold0386 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 1333 - 1279
Alignment:
Q  119 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcatgacaggtca 173  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  1333 gaaacgtacataacatgtgacacttacaaacatccaataaaatcatgacaggtca 1279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 691 - 741
Alignment:
Q  118 ggaaacgtacataacatgtgacaattacaaacatccaatgaaatcatgaca 168  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  691 ggaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 33878620 - 33878674
Alignment:
Q  119 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcatgacaggtca 173  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  33878620 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacaggtca 33878674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 33879253 - 33879203
Alignment:
Q  118 ggaaacgtacataacatgtgacaattacaaacatccaatgaaatcatgaca 168  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||    
T  33879253 ggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 33879203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 46550676 - 46550626
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctcatagaa 68  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  46550676 accaaacactttttctttggtcttgtgaccatattagaatttctcttagaa 46550626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 47541781 - 47541735
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctcat 64  Q
    ||||||||||||||||||| ||  |||||||||||| ||||||||||    
T  47541781 accaaacactttttctttgatctcgtgaccatattagaatttctcat 47541735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 47732466 - 47732508
Alignment:
Q  20 caaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||| |||||||||| |||||||||||||||| ||||||||    
T  47732466 caaacaatttttctttgatcctgtgaccatattagaatttctc 47732508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 13869240 - 13869290
Alignment:
Q  123 cgtacataacatgtgacaattacaaacatccaatgaaatcatgacaggtca 173  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  13869240 cgtacataacatgtggcacttacaaacatccaatgaaatcatgacaggtca 13869290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 27640875 - 27640925
Alignment:
Q  123 cgtacataacatgtgacaattacaaacatccaatgaaatcatgacaggtca 173  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  27640875 cgtacataacatgtggcacttacaaacatccaatgaaatcatgacaggtca 27640925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 13869874 - 13869825
Alignment:
Q  119 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcatgaca 168  Q
    ||||||||||||||||||| || |||||||||| ||||||||||||||||    
T  13869874 gaaacgtacataacatgtggcacttacaaacattcaatgaaatcatgaca 13869825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 36442660 - 36442703
Alignment:
Q  20 caaacactttttctttggtcctgtgaccatattaaaatttctca 63  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  36442660 caaacactttttatttggtcatgtgaccatattaaaatttctca 36442703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 27641478 - 27641429
Alignment:
Q  119 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcatgaca 168  Q
    |||||||||||| |||||| || |||||||||| ||||||||||||||||    
T  27641478 gaaacgtacatatcatgtggcacttacaaacattcaatgaaatcatgaca 27641429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 10719883 - 10719927
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||    
T  10719883 accaaacactttttatttggtcatgtgaccataataaaatttctc 10719927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 3454387 - 3454434
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctcata 65  Q
    |||||| |||||||| ||| || |||||||||||||||||||||||||    
T  3454387 accaaatactttttccttgatcatgtgaccatattaaaatttctcata 3454434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 16778273 - 16778319
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctcat 64  Q
    ||||| |||||||| |||||||||||| |||||||| ||||||||||    
T  16778273 accaagcactttttatttggtcctgtggccatattagaatttctcat 16778319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 21239045 - 21239003
Alignment:
Q  19 ccaaacactttttctttggtcctgtgaccatattaaaatttct 61  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||    
T  21239045 ccaaacactttttgtttggtcttgtgaccatattagaatttct 21239003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 20654502 - 20654461
Alignment:
Q  21 aaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||    
T  20654502 aaacactttttatttggtcatgtgaccatattagaatttctc 20654461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 23145973 - 23145929
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||| |||||||||||| |||| ||||||||||| ||||||||    
T  23145973 accaaatactttttctttgatcctatgaccatattagaatttctc 23145929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 37872173 - 37872129
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||| ||||||||||||||||| ||| ||||||| ||||||||    
T  37872173 accaaatactttttctttggtcctctgatcatattagaatttctc 37872129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 30208335 - 30208380
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctca 63  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  30208335 accaaacactttttctttggtcctgtgaccatattagaatttctca 30208380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 38460929 - 38460880
Alignment:
Q  119 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcatgaca 168  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||    
T  38460929 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 38460880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 38460427 - 38460481
Alignment:
Q  119 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcatgacaggtca 173  Q
    ||||||||||||||||||| || |||||||||||||||||||| || ||||||||    
T  38460427 gaaacgtacataacatgtggcacttacaaacatccaatgaaattattacaggtca 38460481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 5594922 - 5594962
Alignment:
Q  21 aaacactttttctttggtcctgtgaccatattaaaatttct 61  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  5594922 aaacactttttctttgatcctgtgaccatattaaaatttct 5594962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 39401999 - 39401955
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    ||||||||||||||||||| || |||||| |||||||||||||||    
T  39401999 accaaacactttttctttgatcatgtgacgatattaaaatttctc 39401955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 40719865 - 40719821
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||||||||||||||| || |||||||||| ||||||||    
T  40719865 accaaacactttttctttggtcatgcgaccatattagaatttctc 40719821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 1162089 - 1162043
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctcat 64  Q
    |||||||||||||||||| ||||| ||||||||| | ||||||||||    
T  1162089 accaaacactttttctttagtcctatgaccatataagaatttctcat 1162043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 34173559 - 34173603
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||||||| ||| ||| ||||||||| ||||||||||||    
T  34173559 accaaacactttttgtttagtcttgtgaccatgttaaaatttctc 34173603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 34514581 - 34514625
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||| ||| ||||||| |||||| |||||||||||||||    
T  34514581 accaaacactatttgtttggtcttgtgactatattaaaatttctc 34514625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 35179296 - 35179341
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctcata 65  Q
    ||||||||||||||||||| |||  ||||||||||| |||||||||||    
T  35179296 accaaacactttttctttgatcc--tgaccatattagaatttctcata 35179341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 25199079 - 25199123
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  25199079 accaaacactttttctttggtcctgtgaccatattagaatttctc 25199123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 22220346 - 22220389
Alignment:
Q  19 ccaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  22220346 ccaaatactttttctttggtcctgtgaccatattaaaatttctc 22220389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 49851471 - 49851417
Alignment:
Q  119 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcatgacaggtca 173  Q
    ||||| ||||||||||||| || ||||||||||||||||||||||| ||||||||    
T  49851471 gaaacatacataacatgtggcacttacaaacatccaatgaaatcataacaggtca 49851417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 49850835 - 49850884
Alignment:
Q  119 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcatgaca 168  Q
    ||||||||||||||||||| || |||||||||| ||||||||||||||||    
T  49850835 gaaacgtacataacatgtggcacttacaaacattcaatgaaatcatgaca 49850884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 2008537 - 2008581
Alignment:
Q  19 ccaaacactttttctttggtcctgtgaccatattaaaatttctca 63  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  2008537 ccaaacactatttctttggtcctgtgaccatattagaatttctca 2008581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 22831143 - 22831103
Alignment:
Q  21 aaacactttttctttggtcctgtgaccatattaaaatttct 61  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  22831143 aaacactttttctttgatcctgtgaccatattaaaatttct 22831103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 45805499 - 45805449
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctcatagaa 68  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  45805499 accaaacactttttatttggtcatgtgaccatattagaatttctcagagaa 45805449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 1994825 - 1994780
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctca 63  Q
    |||||| ||| ||||||||||| ||||||||||||| |||||||||    
T  1994825 accaaatactatttctttggtcatgtgaccatattagaatttctca 1994780  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 3870164 - 3870208
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  3870164 accaaacactttttctttggtcctgtgaccatattagaatttctc 3870208  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 34480099 - 34480055
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  34480099 accaaacactttttctttggtcctgtgaccatattagaatttctc 34480055  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 36400993 - 36401036
Alignment:
Q  19 ccaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  36400993 ccaaacactttttctttagtcctgtgaccatattagaatttctc 36401036  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 30706122 - 30706078
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||||||| |||| || ||||||||||||||||||||||    
T  30706122 accaaacactttttatttgatcatgtgaccatattaaaatttctc 30706078  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 37721585 - 37721630
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctca 63  Q
    |||||||||||||||||| |||  |||||||||||| |||||||||    
T  37721585 accaaacactttttctttagtctcgtgaccatattagaatttctca 37721630  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 9009119 - 9009163
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||| ||| ||||||| ||||||||||||| ||||||||    
T  9009119 accaaacactatttgtttggtcttgtgaccatattagaatttctc 9009163  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 24241614 - 24241667
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctcatagaataa 71  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| || |||||    
T  24241614 accaaatactttttctttggtcctgtgaccatattagaatttctcttataataa 24241667  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 34773389 - 34773345
Alignment:
Q  20 caaacactttttctttggtcctgtgaccatattaaaatttctcat 64  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||    
T  34773389 caaacactttttctttggtcctgtaaccatattagaatttctcat 34773345  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 38746000 - 38745959
Alignment:
Q  21 aaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  38746000 aaacactttttctttggccgtgtgaccatattaaaatttctc 38745959  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 8971569 - 8971609
Alignment:
Q  22 aacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  8971569 aacactttttttttggtcctgtgaccatattagaatttctc 8971609  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 41942916 - 41942960
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||||    
T  41942916 accaaacactttatctttggtcgtgtgaccatattagaatttctc 41942960  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 16253166 - 16253210
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    ||||||||||||||||||| || ||||| ||||||| ||||||||    
T  16253166 accaaacactttttctttgatcatgtgatcatattagaatttctc 16253210  T

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Target: scaffold0095 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 35503 - 35547
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    ||||||||||||||||||| || |||||| |||||||||||||||    
T  35503 accaaacactttttctttgatcatgtgacgatattaaaatttctc 35547  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 17852690 - 17852650
Alignment:
Q  20 caaacactttttctttggtcctgtgaccatattaaaatttc 60  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  17852690 caaacactttttctttcgttctgtgaccatattaaaatttc 17852650  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 8541565 - 8541611
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctcat 64  Q
    |||||||||| |||||||| |||| | ||||||||||||||||||||    
T  8541565 accaaacactatttctttgatcctataaccatattaaaatttctcat 8541611  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 29735759 - 29735710
Alignment:
Q  126 acataacatgtgacaattacaaacat--ccaatgaaatcatgacaggtca 173  Q
    |||||||||||| || ||||||||||  ||||||||||||||||||||||    
T  29735759 acataacatgtggcacttacaaacatatccaatgaaatcatgacaggtca 29735710  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 29735117 - 29735166
Alignment:
Q  119 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcatgaca 168  Q
    ||||| ||||||||||||| || ||||||||||||||| |||| ||||||    
T  29735117 gaaacttacataacatgtggcacttacaaacatccaataaaattatgaca 29735166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 30783456 - 30783412
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||||||| ||||||| ||||||||| ||| ||||||||    
T  30783456 accaaacactttttatttggtcatgtgaccattttagaatttctc 30783412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 34998665 - 34998709
Alignment:
Q  18 accaaacactttttctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||| |||||||||||| || ||||||||||||| ||||||||    
T  34998665 accaaatactttttctttgatcatgtgaccatattagaatttctc 34998709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 18022 - 17977
Alignment:
Q  18 accaaacacttttt-ctttggtcctgtgaccatattaaaatttctc 62  Q
    |||||||||||||| ||||||||| |||||||||||| ||||||||    
T  18022 accaaacacttttttctttggtcccgtgaccatattagaatttctc 17977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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