View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_low_24 (Length: 251)
Name: NF10742_low_24
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 13272636 - 13272402
Alignment:
| Q |
7 |
gatttccctgaaatttgtgacgttcttggtgttagtattgtaaatctggattccaatgaatggaaacaagaaaggactattcttcattcattgctcaaag |
106 |
Q |
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| T |
13272636 |
gatttccctgaaatttgtgacgttcttggtgttagtattgtaaatctggattccaatgaatggaagcaagaaaggactattcttcattcattgcttaaag |
13272537 |
T |
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| Q |
107 |
ggaaaacttttgagacatcccttcgacaaaacattcaaaagaagatagaaagttgccttttaccatttttcgatcatgcatcaaaaggtgtacacgtact |
206 |
Q |
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| T |
13272536 |
caaaaacttttgagacatcccttcgacaaaacattcaaaagaaactagaaagttgtctattaccatttcttgatcatgcatcaaaaggtgtacacgtact |
13272437 |
T |
|
| Q |
207 |
tgatttacaagatattattgaaaggttcacctttg |
241 |
Q |
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| T |
13272436 |
tgatttacaagatattattgagaggttcacctttg |
13272402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 12963062 - 12963294
Alignment:
| Q |
7 |
gatttccctgaaatttgtgacgttcttggtgttagtattgtaaatctggattccaatgaatggaaacaagaaaggactattcttcattcattgctcaaag |
106 |
Q |
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| T |
12963062 |
gatttccctgaaatctttgaagttcttggtattagtcttataaatttggattccaatgattggaaacaagagaggacaatacttcattcattgctcaaaa |
12963161 |
T |
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| Q |
107 |
ggaaaacttttgagacatcccttcgacaaaacattcaaaagaagatagaaagttgccttttaccatttttcgatcatgcatcaaaaggtgtacacgtact |
206 |
Q |
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| T |
12963162 |
ggaaaagttttaagacatcccttcaacaaatcattcaaaagaagctagagagttgtctattaccatttcttgatcatgcaacaaaaggtttacaagtact |
12963261 |
T |
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| Q |
207 |
tgatttacaagatattattgaaaggttcacctt |
239 |
Q |
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| T |
12963262 |
cgatttacaagatattcttgagaggttcacctt |
12963294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 13087157 - 13086923
Alignment:
| Q |
7 |
gatttccctgaaatttgtgacgttcttggtgttagtattgtaaatctggattccaatgaatggaaacaagaaaggactattcttcattcattgctcaaag |
106 |
Q |
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||||||| |||||||| ||| ||| | |||||| ||||| ||||| |||||| | | |||||||||||||| ||||| | ||||||||||||||||||| |
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| T |
13087157 |
gatttccatgaaatttttgatgttttaggtgttggtattttaaatttggatttcgaagaatggaaacaagagaggacactacttcattcattgctcaaag |
13087058 |
T |
|
| Q |
107 |
ggaaaacttttgagacatcccttcgacaaaacattcaaaagaagatagaaagttgccttttaccatttttcgatcatgcatcaaaaggtgtacacgtact |
206 |
Q |
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| T |
13087057 |
ggaaaagttttgagatatcctttcaacaaaacattcaaaagaagctagagaatttcctattacgatttcttgatcatgcatccaaaagtgtacaggtact |
13086958 |
T |
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| Q |
207 |
tgatttacaagatattattgaaaggttcacctttg |
241 |
Q |
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|||||||||||||||| |||| ||||| ||||||| |
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| T |
13086957 |
tgatttacaagatattcttgagaggtttacctttg |
13086923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 13243696 - 13243930
Alignment:
| Q |
7 |
gatttccctgaaatttgtgacgttcttggtgttagtattgtaaatctggattccaatgaatggaaacaagaaaggactattcttcattcattgctcaaag |
106 |
Q |
| |
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||||||| ||| |||| ||| |||| |||||| ||||| | ||| |||||||||| |||||| ||||||||||| | | |||||||||||||||||| |
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| T |
13243696 |
gatttccttgagatttttgaaattctcggtgttggtattttcaatttggattccaaggaatgggaacaagaaagggcactacttcattcattgctcaaaa |
13243795 |
T |
|
| Q |
107 |
ggaaaacttttgagacatcccttcgacaaaacattcaaaagaagatagaaagttgccttttaccatttttcgatcatgcatcaaaaggtgtacacgtact |
206 |
Q |
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|||| ||||||| || | || |||||||||||||||||| |||| | |||||| ||||||||| | ||||||||||| |||| ||| | ||||| |
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| T |
13243796 |
ccaaaaactttgagatattctatcaacaaaacattcaaaagaaactagagaattgcctattaccatttcttgatcatgcatccaaagaagtaaaagtact |
13243895 |
T |
|
| Q |
207 |
tgatttacaagatattattgaaaggttcacctttg |
241 |
Q |
| |
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||||||||||||| || |||| ||||| ||||||| |
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| T |
13243896 |
tgatttacaagatgttcttgagaggtttacctttg |
13243930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 13080040 - 13080271
Alignment:
| Q |
10 |
ttccctgaaatttgtgacgttcttggtgttagtattgtaaatctggattccaatgaatggaaacaagaaaggactattcttcattcattgctcaaaggga |
109 |
Q |
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|||| |||||||| ||| ||||||||||| ||||| | ||| | ||||| ||||||||||||||||| || | | ||||||||||||||||| ||| |
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| T |
13080040 |
ttccatgaaatttttgaaattcttggtgttggtattttcaatttagattctaatgaatggaaacaagagagagcattgtttcattcattgctcaaaagga |
13080139 |
T |
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| Q |
110 |
aaacttttgagacatcccttcgacaaaacattcaaaagaagatagaaagttgccttttaccatttttcgatcatgcatcaaaaggtgtacacgtacttga |
209 |
Q |
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||| ||||||| | ||||| ||| |||| ||| ||| |||| | || ||| ||||||||| | ||||||||||| ||||| ||||| ||||||| |
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| T |
13080140 |
aaagctttgagatactccttcatcaatgcattagaaataagttagagattttcctattaccatttcttgatcatgcatccaaaggagtacaaatacttga |
13080239 |
T |
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| Q |
210 |
tttacaagatattattgaaaggttcacctttg |
241 |
Q |
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||||||||||||| |||| ||||||||||||| |
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| T |
13080240 |
tttacaagatattcttgagaggttcacctttg |
13080271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 19278322 - 19278553
Alignment:
| Q |
10 |
ttccctgaaatttgtgacgttcttggtgttagtattgtaaatctggattccaatgaatggaaacaagaaaggactattcttcattcattgctcaaaggga |
109 |
Q |
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|||| ||| |||| ||| ||||| ||| || ||||| | ||| ||||||||||||||||||||||||||||| | | ||||||||||||||||| | |
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| T |
19278322 |
ttccatgagatttttgaagttctcggtcttggtattttcaatttggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaaca |
19278421 |
T |
|
| Q |
110 |
aaacttttgagacatcccttcgacaaaacattcaaaagaagatagaaagttgccttttaccatttttcgatcatgcatcaaaaggtgtacacgtacttga |
209 |
Q |
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||| |||||| || | || ||||||||||||||||||| |||| | ||| | ||||||||| | ||||||||||| |||| ||| | | ||||| |
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| T |
19278422 |
aaaacattgagatattctatcaacaaaacattcaaaagaagctagagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttga |
19278521 |
T |
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| Q |
210 |
tttacaagatattattgaaaggttcacctttg |
241 |
Q |
| |
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|||||||||| ||||||| ||||| ||||||| |
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| T |
19278522 |
tttacaagatgttattgagaggtttacctttg |
19278553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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