View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10742_low_25 (Length: 250)
Name: NF10742_low_25
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_25 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 23904577 - 23904817
Alignment:
| Q |
10 |
gcagagaaagagtttgattgagtttgcaatctagatatgaaacactagcatgcaacatgcaaatcattaatgacatgtgttatagttatgaagcaagttt |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23904577 |
gcagagagagagtttgattgagtttgcaatctagatatgaaacactagcatgcaacatgcaaatcattaatgacatgtgttatagttatgaagcaagttt |
23904676 |
T |
|
| Q |
110 |
atttgagaattgttgaccctatttgtcccatccctcaaaatatgtactatattttatcttatctgatatatatgagggtaaactagacaagacaagataa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23904677 |
atttgagaattgttgaccctatttgtcccatccctcaaaatatgtactatattttatcttatctgatatatatgagggtaaactagacaagacaagataa |
23904776 |
T |
|
| Q |
210 |
ttagtgttttgtggaaatagctcatttcgctagacacaacc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23904777 |
ttagtgttttgtggaaatagctcatttcgctagacacaacc |
23904817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University