View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_low_29 (Length: 239)
Name: NF10742_low_29
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 12505199 - 12505428
Alignment:
| Q |
1 |
aacatgccaccaggtccattcatttcctcaaacccaagagtcatagcactcttagatgcttcatcgtttccgatcctcttcgacaacaaaaaagtcgaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12505199 |
aacatgccaccaggtccattcatttcctcaaacccaagagtcatagcactcttagatgcttcatcgtttccgatcctcttcgacaacaaaaaagtcgaga |
12505298 |
T |
|
| Q |
101 |
aatacaatgtcttcgatggtaccttcatgccatcgatagacttcaccggaggctaccgtgtctgtcctttcttagacacaactgaaccaaaccatgcact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12505299 |
aatacaatgtcttcgatggtaccttcatgccatcgatagacttcactggaggctaccgtgtctgtcctttcttagacacaactgaaccaaaccatgcact |
12505398 |
T |
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| Q |
201 |
tatcaaaggtttacttcttaacgttcttct |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12505399 |
tatcaaaggtttacttcttaacgttcttct |
12505428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 12490654 - 12490865
Alignment:
| Q |
1 |
aacatgccaccaggtccattcatttcctcaaacccaagagtcatagcactcttagatgcttcatcgtttccgatcctcttcgacaacaaaaaagtcgaga |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| || ||||| ||||||||||||||||||||||| | |
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| T |
12490654 |
aacatgccaccaggtcccttcatttcctcaaacccaagagtcatagcactcttagacgccgcatctttcccgatactcttcgacaacaaaaaagtcgaaa |
12490753 |
T |
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| Q |
101 |
aatacaatgtcttcgatggtaccttcatgccatcgatagacttcaccggaggctaccgtgtctgtcctttcttagacacaactgaaccaaaccatgcact |
200 |
Q |
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|| ||| ||| |||| || || |||||||| |||| | | |||||||| || |||||||| ||| ||| | |||||||||||||||||||||||||||| |
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| T |
12490754 |
aactcaacgtcctcgacggcacattcatgccgtcgacaaaattcaccggtggttaccgtgtatgtgcttacctagacacaactgaaccaaaccatgcact |
12490853 |
T |
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| Q |
201 |
tatcaaaggttt |
212 |
Q |
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|||||||||||| |
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| T |
12490854 |
tatcaaaggttt |
12490865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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