View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_low_3 (Length: 429)
Name: NF10742_low_3
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 47037114 - 47037531
Alignment:
| Q |
1 |
attctacatatcaacaactgcctcttttggtgcttatctcaatatccacttgtttttagcaaccgaatcaatgttaannnnnnnn-gtacgtttcaaact |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47037114 |
attctacatatcaacaactgcctcttttggtgcttatctcaatatccacttgtttttagcaaccgaatcaatgttaaattttttttgtacgtttcaaact |
47037213 |
T |
|
| Q |
100 |
aatgccgctttgttgggccactgccgttcctatgaatcctatctttatctcttcgtcattcgttggcctcttttcacattggttaattgcatttgcacat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47037214 |
aatgccgctttgttgggccactgccgttcctatgaatcctatctttatctcttcgtcattcgttggcctcttttcacattggttaattgcatttgcacat |
47037313 |
T |
|
| Q |
200 |
attttgatcaatcatcatcaagataacatagttcacaaaaaacgcaagtgtcttcnnnnnnncatattgctatagagtgattagaatgattttgtttgtc |
299 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
47037314 |
attttgatctatcatcatcaagataatatagttcacaaaaaacgcaagtgtcttaaaaaaaacatattgatatagagtgattagaatgattttgtttgtc |
47037413 |
T |
|
| Q |
300 |
aagcaacaactacctcaacgcgaattggagcaatgaccgtcaatatgcgagttgtgagtatttgcacacacttttacgctcaagctaataaaag-----a |
394 |
Q |
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|||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| | |
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| T |
47037414 |
aagcaacaaccgcctcaatgcgaattggagcaataaccgtcaatatgcgagttgtgagtatttgcagacacttttacgctcaagctagtaaaagagcaaa |
47037513 |
T |
|
| Q |
395 |
gagtgagaggttaaactt |
412 |
Q |
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|||||||||||||||||| |
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| T |
47037514 |
gagtgagaggttaaactt |
47037531 |
T |
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