View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_low_32 (Length: 236)
Name: NF10742_low_32
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 21216472 - 21216309
Alignment:
| Q |
30 |
ggatcatagtctagatcctgatcatcatcactagtttcttcaccatcttccatctccacatcatttttaatattgtaatcctctttttccatgttttgct |
129 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| || ||||||||||||||||| |
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| T |
21216472 |
ggatcatagtctagatcctcatcatcatcactagtttcttcaccatcttccatctctacatcattctcaatattgtaat-ctttttttccatgttttgct |
21216374 |
T |
|
| Q |
130 |
tcattttctcaactaactccggacccattccttcagccacagcggtaaagtcatagtaccaaaca |
194 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21216373 |
tcatttcctcaactaactccggttatgttccttcagccacagcggtaaagtcatagtaccaaaca |
21216309 |
T |
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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 11584022 - 11584128
Alignment:
| Q |
30 |
ggatcatagtctagatcctgatcatcatcactagtttcttcaccatcttccatctccacatcatttttaatattgtaatcctctttttccatgttttgct |
129 |
Q |
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||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| | |
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| T |
11584022 |
ggatcatagtctagatcctcatcgtcatcacttgtttcttcaccatcttccatatccacatcattttcaatattgtaatcctctttatccatgttttcca |
11584121 |
T |
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| Q |
130 |
tcatttt |
136 |
Q |
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||||||| |
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| T |
11584122 |
tcatttt |
11584128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 24169374 - 24169272
Alignment:
| Q |
30 |
ggatcatagtctagatcctgatcatcatcactagtttcttcaccatcttccatctccacatcatttttaatattgtaatcctctttttccatgttttgct |
129 |
Q |
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|
||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| || |
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| T |
24169374 |
ggatcatagtctagatcct---catcatcacttgtatcttcaccatcttccatctccacatcattttcaatattataatcctctttatccatgtttacct |
24169278 |
T |
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| Q |
130 |
tcattt |
135 |
Q |
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|||||| |
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|
| T |
24169277 |
tcattt |
24169272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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