View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10742_low_36 (Length: 228)
Name: NF10742_low_36
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 7510177 - 7510109
Alignment:
| Q |
57 |
tgtagaaatctttaagtaaagcaacaaaa-caaccagcttacatgttacaacaaccatggactaatata |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7510177 |
tgtagaaatctttaagtaaagcaacaaaaacaagcagcttacatgttacaacaaccatggactaatata |
7510109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 53232140 - 53232112
Alignment:
| Q |
160 |
tattacctaaaattaagttaagagatgaa |
188 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
53232140 |
tattacctaaaattaagttaagagatgaa |
53232112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University