View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_low_41 (Length: 206)
Name: NF10742_low_41
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 44843201 - 44843378
Alignment:
| Q |
12 |
agaagaacaaaactgaaacaccgctacatttaacattttcctagtattttttagtacgttgaaattaagtnnnnnnntgtaacttgaatttgaagtaacg |
111 |
Q |
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| T |
44843201 |
agaagaacaaaactgaaatgccgctacatttaacattttccttgtattttttaatactttgaaattaagtaaaaaaatgtatcttgaatttgaagtaacg |
44843300 |
T |
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| Q |
112 |
actaggtgtacactactgtcctccaaggtcacaaactaagagcatactcttgctaagagtagcttaagtggaccttag |
189 |
Q |
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| T |
44843301 |
actaggtgtacactactgttctccaaggtcacaaactaagagcatactcttgctaagagtagcttaagtggaccttag |
44843378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 44842566 - 44842724
Alignment:
| Q |
13 |
gaagaacaaaactgaaacaccgctacatttaacattttccta-gtattttttagtacgttgaaattaagtnnnnnnntgtaacttgaatttgaagtaacg |
111 |
Q |
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|||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44842566 |
gaagaacaaaactgaaac---gctacatttaacatttttttttgcattttttagtacgttgaaattaagtaaaaaaatgtaacttgaatttgaagtaacg |
44842662 |
T |
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| Q |
112 |
actaggtgtacactactgtcctccaaggtcacaaactaagagcatactcttgctaagagtag |
173 |
Q |
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| T |
44842663 |
actaggtgtacactattgtcgtccaaggacacaaactaagagcatgctcttgctatgagtag |
44842724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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