View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10742_low_5 (Length: 422)
Name: NF10742_low_5
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 44464956 - 44464545
Alignment:
| Q |
1 |
atcatacaggtgctatatttgagtatgcataggtttggctgctctgggaattcataattatttgtaacccatagaaatcaatcagaaaaaacagtaattc |
100 |
Q |
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| T |
44464956 |
atcatacaggtgctatatttgagtatgcataggtttggctgctctgggaattcataattatttgtaacccatagaaaacaatcagaaaaaacagtaattc |
44464857 |
T |
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| Q |
101 |
atgcgccccgtgtatcttttatagatcaccatatttgcagaatgtataaccccacccatccaagaggctccaggaaattgcagcaccccttaagtgaggg |
200 |
Q |
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| T |
44464856 |
atgcgccccgtgtatcttttatagatcaccatatttgcagaatgtataaccccacccatccaagaggctccaggaaattgcagcaccccttaagtgaggg |
44464757 |
T |
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| Q |
201 |
tgaggcatatattgtccattgttgtattttatcattcttttcacaagaagacaaaatcacacatatatagttgcaaatagaacttccttgatgtacacaa |
300 |
Q |
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| T |
44464756 |
tgaggcatatattgtccattgttgtattttatcattcttttcacaagaaaacaaaatcacacatatatagttgcaaatagaacttccttgatgtacaaaa |
44464657 |
T |
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| Q |
301 |
cgtatgaaaagaaaaccgcttcaaataagaagtgtatgcaaatgatgctagagttaggatttattttgtttttgttatttgtgtggctaaactgagttac |
400 |
Q |
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| T |
44464656 |
cttatgaaaagaaaactgcttcaaataagaagtgtatgcaaatgatgctagagttaggatttattttgtttttgttatttgtgtggctaaactgagttac |
44464557 |
T |
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| Q |
401 |
tcatgtcctttg |
412 |
Q |
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| T |
44464556 |
tcatgtcctttg |
44464545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39355729 - 39355775
Alignment:
| Q |
1 |
atcatacaggtgctatatttgagtatgcataggtttggctgctctgg |
47 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39355729 |
atcatacaggtgctatatttgagtatgcataggtttcgctgctctgg |
39355775 |
T |
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