View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10742_low_7 (Length: 398)

Name: NF10742_low_7
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10742_low_7
NF10742_low_7
[»] chr7 (26 HSPs)
chr7 (1-374)||(19063252-19063624)
chr7 (1-155)||(1274324-1274478)
chr7 (185-374)||(1274508-1274698)
chr7 (257-374)||(22909111-22909228)
chr7 (264-374)||(2477658-2477769)
chr7 (264-376)||(45500759-45500872)
chr7 (264-374)||(3544931-3545042)
chr7 (264-374)||(12183866-12183977)
chr7 (264-374)||(24482744-24482855)
chr7 (264-374)||(12090511-12090622)
chr7 (264-374)||(12190843-12190954)
chr7 (264-374)||(2631396-2631507)
chr7 (264-374)||(8107939-8108050)
chr7 (264-374)||(10346356-10346467)
chr7 (264-374)||(31664545-31664656)
chr7 (264-374)||(1953957-1954068)
chr7 (264-374)||(2797614-2797725)
chr7 (264-374)||(22321851-22321962)
chr7 (264-374)||(31158327-31158438)
chr7 (264-372)||(23795094-23795203)
chr7 (264-374)||(19472314-19472425)
chr7 (264-374)||(22818412-22818523)
chr7 (264-347)||(6172527-6172611)
chr7 (264-374)||(31878601-31878711)
chr7 (246-348)||(29032861-29032965)
chr7 (264-323)||(33160182-33160242)
[»] chr6 (23 HSPs)
chr6 (225-373)||(34913410-34913558)
chr6 (194-374)||(14270610-14270782)
chr6 (264-374)||(5989054-5989164)
chr6 (264-374)||(34006502-34006613)
chr6 (264-374)||(24878865-24878976)
chr6 (264-374)||(32806813-32806924)
chr6 (257-374)||(25976943-25977059)
chr6 (263-370)||(1454795-1454902)
chr6 (263-370)||(1466487-1466594)
chr6 (264-374)||(3539047-3539158)
chr6 (264-374)||(14479560-14479671)
chr6 (264-374)||(24161306-24161417)
chr6 (264-374)||(26515479-26515590)
chr6 (264-374)||(21596578-21596693)
chr6 (264-374)||(21631180-21631293)
chr6 (274-374)||(32821812-32821912)
chr6 (264-374)||(9932856-9932967)
chr6 (263-374)||(13173867-13173978)
chr6 (263-374)||(13182400-13182511)
chr6 (264-345)||(26510392-26510474)
chr6 (21-117)||(6856341-6856437)
chr6 (29-120)||(13106938-13107031)
chr6 (264-348)||(26604339-26604424)
[»] chr1 (18 HSPs)
chr1 (254-374)||(8996313-8996433)
chr1 (264-374)||(11738848-11738959)
chr1 (264-374)||(13218096-13218207)
chr1 (264-374)||(16129659-16129770)
chr1 (264-374)||(41000154-41000265)
chr1 (264-374)||(9667746-9667857)
chr1 (264-374)||(33492249-33492360)
chr1 (264-374)||(38121983-38122094)
chr1 (264-374)||(39001232-39001343)
chr1 (264-374)||(44505321-44505432)
chr1 (264-374)||(12168267-12168378)
chr1 (264-374)||(16832833-16832944)
chr1 (264-374)||(49249072-49249183)
chr1 (264-374)||(432391-432502)
chr1 (250-374)||(15161087-15161213)
chr1 (304-374)||(16130254-16130324)
chr1 (264-323)||(36080220-36080279)
chr1 (264-368)||(13830288-13830392)
[»] scaffold0298 (2 HSPs)
scaffold0298 (257-374)||(12253-12370)
scaffold0298 (257-374)||(16023-16140)
[»] scaffold0124 (1 HSPs)
scaffold0124 (257-374)||(12188-12305)
[»] chr8 (23 HSPs)
chr8 (257-374)||(13509957-13510074)
chr8 (257-374)||(13599487-13599604)
chr8 (247-374)||(22243295-22243423)
chr8 (263-374)||(22233902-22234013)
chr8 (264-374)||(16958550-16958661)
chr8 (263-374)||(22222716-22222829)
chr8 (263-374)||(22229058-22229171)
chr8 (263-370)||(1607284-1607392)
chr8 (264-374)||(8743334-8743445)
chr8 (264-374)||(9068218-9068329)
chr8 (264-374)||(16580085-16580196)
chr8 (264-374)||(22180601-22180712)
chr8 (264-374)||(28370093-28370204)
chr8 (264-374)||(28926194-28926305)
chr8 (264-374)||(41577382-41577493)
chr8 (264-373)||(12538157-12538267)
chr8 (248-374)||(17992876-17993005)
chr8 (264-374)||(3298802-3298913)
chr8 (264-374)||(4862001-4862112)
chr8 (264-374)||(11309038-11309149)
chr8 (264-374)||(27348026-27348137)
chr8 (290-374)||(24040743-24040827)
chr8 (264-347)||(34006838-34006922)
[»] chr5 (17 HSPs)
chr5 (254-345)||(32226823-32226914)
chr5 (264-374)||(27167148-27167259)
chr5 (264-374)||(34869797-34869908)
chr5 (264-374)||(7314965-7315076)
chr5 (264-374)||(9404424-9404535)
chr5 (264-374)||(11723327-11723438)
chr5 (264-374)||(11766755-11766866)
chr5 (264-374)||(31845980-31846091)
chr5 (264-374)||(33434603-33434714)
chr5 (264-374)||(34456297-34456408)
chr5 (264-374)||(14344469-14344580)
chr5 (264-374)||(16904660-16904771)
chr5 (264-374)||(30607127-30607238)
chr5 (257-374)||(37251956-37252072)
chr5 (251-348)||(39656115-39656214)
chr5 (264-374)||(24835735-24835846)
chr5 (264-374)||(6269890-6270001)
[»] chr3 (24 HSPs)
chr3 (264-374)||(33247988-33248099)
chr3 (246-370)||(2357141-2357267)
chr3 (264-374)||(45527647-45527758)
chr3 (264-374)||(3588400-3588511)
chr3 (264-374)||(20837094-20837205)
chr3 (264-374)||(27030734-27030845)
chr3 (264-374)||(36469486-36469596)
chr3 (264-373)||(7653274-7653384)
chr3 (264-374)||(8615503-8615614)
chr3 (264-374)||(9989396-9989507)
chr3 (264-374)||(10386121-10386232)
chr3 (264-374)||(22097667-22097778)
chr3 (264-374)||(27850601-27850711)
chr3 (66-120)||(30046052-30046106)
chr3 (247-372)||(1232544-1232676)
chr3 (264-367)||(23193923-23194027)
chr3 (264-374)||(23385396-23385507)
chr3 (264-374)||(37471737-37471848)
chr3 (264-367)||(20963711-20963815)
chr3 (268-347)||(26335121-26335201)
chr3 (264-374)||(48168244-48168355)
chr3 (264-373)||(52308137-52308247)
chr3 (264-317)||(49434097-49434150)
chr3 (290-374)||(4743051-4743135)
[»] chr2 (19 HSPs)
chr2 (264-374)||(36557573-36557684)
chr2 (264-374)||(28457928-28458039)
chr2 (264-374)||(36040313-36040424)
chr2 (264-374)||(36667920-36668031)
chr2 (264-374)||(23925082-23925193)
chr2 (264-374)||(32522929-32523040)
chr2 (264-374)||(42702257-42702368)
chr2 (264-374)||(29223715-29223826)
chr2 (264-374)||(29337014-29337125)
chr2 (264-374)||(5784575-5784686)
chr2 (264-374)||(13230392-13230503)
chr2 (268-374)||(14700645-14700752)
chr2 (264-374)||(27257385-27257496)
chr2 (304-374)||(21160006-21160076)
chr2 (264-323)||(492739-492798)
chr2 (264-370)||(24663186-24663293)
chr2 (264-329)||(8687769-8687835)
chr2 (304-374)||(9787157-9787227)
chr2 (266-374)||(43991533-43991636)
[»] scaffold1832 (1 HSPs)
scaffold1832 (264-374)||(21-132)
[»] chr4 (20 HSPs)
chr4 (264-374)||(26069725-26069836)
chr4 (264-374)||(30218442-30218553)
chr4 (264-374)||(40995600-40995711)
chr4 (247-373)||(33110755-33110884)
chr4 (264-374)||(20948745-20948856)
chr4 (284-374)||(53895400-53895490)
chr4 (266-374)||(46692087-46692196)
chr4 (264-374)||(4839187-4839298)
chr4 (264-374)||(323438-323549)
chr4 (264-374)||(1187965-1188076)
chr4 (264-374)||(19247878-19247989)
chr4 (264-374)||(21677718-21677829)
chr4 (264-374)||(26373680-26373791)
chr4 (264-374)||(42532938-42533049)
chr4 (264-374)||(22047681-22047792)
chr4 (264-374)||(44432104-44432215)
chr4 (264-347)||(5273629-5273713)
chr4 (264-374)||(55326774-55326887)
chr4 (264-347)||(52618514-52618598)
chr4 (264-348)||(35416760-35416845)
[»] scaffold0091 (1 HSPs)
scaffold0091 (257-374)||(14178-14295)
[»] scaffold0019 (1 HSPs)
scaffold0019 (264-374)||(116618-116729)
[»] scaffold0059 (1 HSPs)
scaffold0059 (264-373)||(16525-16635)
[»] scaffold0159 (1 HSPs)
scaffold0159 (264-374)||(28950-29061)
[»] scaffold0147 (1 HSPs)
scaffold0147 (264-374)||(6732-6843)
[»] scaffold0076 (1 HSPs)
scaffold0076 (264-374)||(25701-25812)
[»] scaffold0014 (1 HSPs)
scaffold0014 (264-374)||(76502-76613)
[»] scaffold0505 (1 HSPs)
scaffold0505 (254-376)||(1033-1157)
[»] scaffold1494 (1 HSPs)
scaffold1494 (264-374)||(1564-1675)
[»] scaffold0336 (1 HSPs)
scaffold0336 (264-374)||(8742-8853)
[»] scaffold0160 (1 HSPs)
scaffold0160 (251-320)||(35388-35458)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 19063252 - 19063624
Alignment:
Q  1 caagaaacttgtgtacattgattggccacgtgaagaaactcttggagggtgtataaagaagtagatacaagtgggattggtttattggtcaatgatagta 100  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||     
T  19063252 caagaaacttaagtacatagattggccacgtgaagaaactcttggagggtgtataaagatgtagatacaagtgggcttggtttattggtcaatgatagtg 19063351  T
Q  101 atattgttgtgttgacccgatatcaaaataggagagaactaggtcacttgagattnnnnnnnnnnnnnnnnnnnnnncacgttgacaacaagcagcggca 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||| |||||||    
T  19063352 atattgttgtgtttacccgatatcaaaataggagagaactaggtcacttgagattaaaaagggaaggaaagaaaaa-cacgttgacaacaaggagcggca 19063450  T
Q  201 catcactgtttgggcagagagcaatatcacatatttttggagaaatagagagatgacatttctagagaaacacaaagcaaggtgttaagagtatattcaa 300  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||| ||||| ||||||    
T  19063451 catcactctttgggcagagagcaatatcacatatttttggagagatagagagatggtatttctagagaaacacaaagtaaggtgttaggagtagattcaa 19063550  T
Q  301 cctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgcaaagctatca 374  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  19063551 cctaaaatttgttgagacatcatggatctaagcattgaatcttcatctcttcttcattctatgtaaagctatca 19063624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 1274324 - 1274478
Alignment:
Q  1 caagaaacttgtgtacattgattggccacgtgaagaaactcttggagggtgtataaagaagtagatacaagtgggattggtttattggtcaatgatagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1274324 caagaaacttgtgtacattgattggccacgtgaagaaactcttggagggtgtataaagaagtagatacaagtgggcttggtttattggtcaatgatagta 1274423  T
Q  101 atattgttgtgttgacccgatatcaaaataggagagaactaggtcacttgagatt 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1274424 atattgttgtgttgacccgatatcaaaataggagagaactaggtcacttgagatt 1274478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 185 - 374
Target Start/End: Original strand, 1274508 - 1274698
Alignment:
Q  185 acaacaagcagcggcacatcactgttt-gggcagagagcaatatcacatatttttggagaaatagagagatgacatttctagagaaacacaaagcaaggt 283  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  1274508 acaacaaggagcggcacatcactattttgggcagagagcaatatcacatatttttggagagatagagagatggcatttctagagaaacacaaagtaaggt 1274607  T
Q  284 gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgcaaagctatca 374  Q
    |||| ||||| ||| |||  |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  1274608 gttatgagtagatttaactcaagatttgttgagacatcatggatctcggcattgaatctttatctcttcttcatcctatgcaaagctatca 1274698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 257 - 374
Target Start/End: Original strand, 22909111 - 22909228
Alignment:
Q  257 catttctagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttca 356  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||    
T  22909111 catttctagagaaacacaaagcaaggtgttaggagtagattcaatctaagatttgttgagacatcatggatctagtcattgaatcttcatcttttcttca 22909210  T
Q  357 tcctatgcaaagctatca 374  Q
    |||| |||||||||||||    
T  22909211 tcctttgcaaagctatca 22909228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 2477658 - 2477769
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |    
T  2477658 agagaaacacaaagcaaggtagttaggagtagattcaacccaagatttgttgagacatcatggatctaggcattgaatcttcatcttttcctcatccttt 2477757  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  2477758 gcaaagctatca 2477769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 264 - 376
Target Start/End: Complemental strand, 45500872 - 45500759
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||||||||| | |||||||||||||| ||||||||||| | |    
T  45500872 agagaaacacaaagcaaggtagttatgagtagattcaagccaagatttgttgagacatcatagatcttgtcattgaatcttcatttcttcttcatcattt 45500773  T
Q  363 gcaaagctatcaca 376  Q
    ||||||||||||||    
T  45500772 gcaaagctatcaca 45500759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 3545042 - 3544931
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||| |||| ||||| |||| ||||| |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| |    
T  3545042 agagaaacaaaaagaaaggtagttaggagtagattcaacccaagatttgttgagacatcatggatctaggcattaaatcttcatctcttctccatccttt 3544943  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  3544942 gcaaagctatca 3544931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 12183866 - 12183977
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||||||||| | ||| |||||||||||| ||||||||||| |    
T  12183866 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatagatcttgtcatggaatcttcatcttttcttcatccttt 12183965  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  12183966 gcaaagctatca 12183977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 24482744 - 24482855
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||  |||| ||||| ||  |||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |    
T  24482744 agagaaacacaaagcaagggagttatgagtagatcaaacccaagatttgttgagacatcatggatctagacattgaatcttcatctcttcttcatccttt 24482843  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  24482844 gcaaagctatca 24482855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 12090622 - 12090511
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||| ||||||||||| |    
T  12090622 agagaaacacaaagcaaggtagttaggagtaaattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatccttt 12090523  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  12090522 gcaaagctatca 12090511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 12190843 - 12190954
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||| ||||||||||| |    
T  12190843 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatccttt 12190942  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  12190943 gcaaagctatca 12190954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 2631396 - 2631507
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  2631396 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 2631495  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  2631496 gcaaagctatca 2631507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 8108050 - 8107939
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  8108050 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 8107951  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  8107950 gcaaagctatca 8107939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 10346467 - 10346356
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  10346467 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 10346368  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  10346367 gcaaagctatca 10346356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 31664656 - 31664545
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||| ||||| ||||| |    
T  31664656 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttaatccttt 31664557  T
Q  363 gcaaagctatca 374  Q
     |||||||||||    
T  31664556 acaaagctatca 31664545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 1953957 - 1954068
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||||||| || |||| ||||| |||||| | |||||||||| ||||||||| ||||| | |||||||||||||  ||||||||||||| |    
T  1953957 agagaaacacaaagcaatgtagttaggagtagattcaagccaagatttgttaagacatcatggatcttgtcattgaatcttcaattcttcttcatccttt 1954056  T
Q  363 gcaaagctatca 374  Q
    | ||||||||||    
T  1954057 gaaaagctatca 1954068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 2797725 - 2797614
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||| |||||| |||| ||||| |||||||| ||||||  ||||||||||||  |||| | ||| |||||||||||| ||||||||||| |    
T  2797725 agagaaacacaaaacaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttcatccttt 2797626  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  2797625 gcaaagctatca 2797614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 22321962 - 22321851
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||| |||||||||| | |||| ||||| |||||| | |||||||||||||||||||| |||||   |||||||||||||||  ||||||||||| |    
T  22321962 agagaaatacaaagcaagttagttaggagtagattcaagccaagatttgttgagacatcatggatcttttcattgaatcttcatcctttcttcatccttt 22321863  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  22321862 gcaaagctatca 22321851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 31158438 - 31158327
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||  | ||| ||||||||| |  ||||||||||| |    
T  31158438 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcatgtcatggaatcttcaccctttcttcatccttt 31158339  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  31158338 gcaaagctatca 31158327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 372
Target Start/End: Original strand, 23795094 - 23795203
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||| ||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  23795094 agagaaactcaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 23795193  T
Q  363 gcaaagctat 372  Q
    ||||||||||    
T  23795194 gcaaagctat 23795203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 19472425 - 19472314
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | | | |||||||||||  |||| |||||| |    
T  19472425 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcttggaatcttcatcctttctgcatccttt 19472326  T
Q  363 gcaaagctatca 374  Q
    | ||||||||||    
T  19472325 gtaaagctatca 19472314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 22818412 - 22818523
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||| |||| ||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | |||  ||||||||||| ||||||||| | |    
T  22818412 agagaaatacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatgaaatcttcatcttttcttcatcattt 22818511  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  22818512 gcaaagctatca 22818523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 6172527 - 6172611
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatc 347  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||||||||  | ||| |||||||||||    
T  6172527 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatagatcctgtcatggaatcttcatc 6172611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 31878601 - 31878711
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||||| ||||||  ||||||||||||  |||| | ||| |||||||||||| || |||||||| |    
T  31878601 agagaaacacaaagcaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatct-tttttcatccttt 31878699  T
Q  363 gcaaagctatca 374  Q
    ||||| ||||||    
T  31878700 gcaaaactatca 31878711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 29032965 - 29032861
Alignment:
Q  246 tagagagatgacatttcta--gagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatctt 343  Q
    |||||||||| ||||||||  ||||||||||||| ||||||||| ||||| |||| |   ||||||||||||||||||||   ||||| ||| |||||||    
T  29032965 tagagagatggcatttctatagagaaacacaaagtaaggtgttaggagtagattctattcaagatttgttgagacatcatgagtctagacatggaatctt 29032866  T
Q  344 catct 348  Q
    |||||    
T  29032865 catct 29032861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 33160182 - 33160242
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcat 323  Q
    |||||||||||||||||||| |||| ||||| |||||| | ||||||||||||||||||||    
T  33160182 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcat 33160242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 225 - 373
Target Start/End: Original strand, 34913410 - 34913558
Alignment:
Q  225 tatcacatatttttggagaaatagagagatgacatttctagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcata 324  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||     
T  34913410 tatcacatatttttggagagatagagagatgacatttctagagaaacacaaagcaaggtgttaggagtagattcaacccaagatttgttgagacattatg 34913509  T
Q  325 gatctaggcattgaatcttcatctcttcttcatcctatgcaaagctatc 373  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  34913510 gatttaggcattgaatcttcatctcttcatcatcctatgcaaagctatc 34913558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 194 - 374
Target Start/End: Original strand, 14270610 - 14270782
Alignment:
Q  194 agcggcacatcactgtttgggcagagagcaatatcacatatttttggagaaatagagagatgacatttctagag--aaacacaaagcaaggtgttaagag 291  Q
    ||||||||||||||||||||| || ||||||||||||||  |||||||||        ||||||||||||||||  |||||||||||||||||||| |||    
T  14270610 agcggcacatcactgtttggggagggagcaatatcacat--ttttggaga--------gatgacatttctagagagaaacacaaagcaaggtgttaggag 14270699  T
Q  292 tatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgcaaagctatca 374  Q
    || |||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||| ||||||    
T  14270700 tagattcaacccaagatttgttgagacatcatagatctaggcagtgaatcttcatcttttcttcatcttttgcaaaactatca 14270782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 5989164 - 5989054
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |||||| | |    
T  5989164 agagaaacacaaagcaaggtagttaggagtagattcaacccaagatttgttgagacatcatggatctaggcattgaatcttcatct-tttttcatcattt 5989066  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  5989065 gcaaagctatca 5989054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 34006502 - 34006613
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||| ||||||||||| |    
T  34006502 agagaaacacaaagcaaggtagttaggagtagattcaaaccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatccttt 34006601  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  34006602 gcaaagctatca 34006613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 24878865 - 24878976
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||| |||||| |||| ||||| |||||||| ||||||  ||||||||||||  |||||||||| |||||||||||| ||||||||||| |    
T  24878865 agagaaacacaaaacaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatctaggcatggaatcttcatcttttcttcatccttt 24878964  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  24878965 gcaaagctatca 24878976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 32806924 - 32806813
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | |||  ||||||||||| ||||||||||| |    
T  32806924 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatgaaatcttcatcttttcttcatccttt 32806825  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  32806824 gcaaagctatca 32806813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 257 - 374
Target Start/End: Original strand, 25976943 - 25977059
Alignment:
Q  257 catttctagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttca 356  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||  ||||||||||||  |||| |  || |||||||||||| |||||||    
T  25976943 catttctagagaaacacaaagcaaggtgttaggagtagattcaacccaagattcattgagacatcatgaatcttgttatggaatcttcatcttttcttca 25977042  T
Q  357 tcctatgcaaagctatca 374  Q
    | || |||||||||||||    
T  25977043 t-ctttgcaaagctatca 25977059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 263 - 370
Target Start/End: Original strand, 1454795 - 1454902
Alignment:
Q  263 tagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||   ||||||||| |||||||||||| |  |||||||| |    
T  1454795 tagagaaacacaaagcaaggtgttaggagtagattctacccaagatttgttgagacatcatgagtctaggcatggaatcttcatctttctttcatccttt 1454894  T
Q  363 gcaaagct 370  Q
    || |||||    
T  1454895 gccaagct 1454902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 263 - 370
Target Start/End: Original strand, 1466487 - 1466594
Alignment:
Q  263 tagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||   ||||||||| |||||||||||| |  |||||||| |    
T  1466487 tagagaaacacaaagcaaggtgttaggagtagattctacccaagatttgttgagacatcatgagtctaggcatggaatcttcatctttctttcatccttt 1466586  T
Q  363 gcaaagct 370  Q
    || |||||    
T  1466587 gccaagct 1466594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 3539047 - 3539158
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  3539047 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 3539146  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  3539147 gcaaagctatca 3539158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 14479560 - 14479671
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | ||||||||||||||||||||  |||| | ||| |||||||||||| ||||||||||| |    
T  14479560 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatgaatcttgtcatggaatcttcatcttttcttcatccttt 14479659  T
Q  363 gcaaagctatca 374  Q
    ||||| ||||||    
T  14479660 gcaaatctatca 14479671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 24161417 - 24161306
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||| |||||||| ||      
T  24161417 agagaaacacaaagcaaggtagttaggagtagattcaagcaaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcattcttg 24161318  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  24161317 gcaaagctatca 24161306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 26515590 - 26515479
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  26515590 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 26515491  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  26515490 gcaaagctatca 26515479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 21596693 - 21596578
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctag----gcattgaatcttcatctcttcttcatc 358  Q
    |||||||||||||||| ||| |||| ||||| |||||| | |||||||||||||||||||||||||| |    |||| |||||||||||| |||||||||    
T  21596693 agagaaacacaaagcatggtagttaggagtagattcaagccaagatttgttgagacatcatagatcttgtcatgcatggaatcttcatcttttcttcatc 21596594  T
Q  359 ctatgcaaagctatca 374  Q
    || |||||||||||||    
T  21596593 ctttgcaaagctatca 21596578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 21631180 - 21631293
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctc--ttcttcatcct 360  Q
    ||||||||| |||||||||| |||||||||| ||| |||  |||||||||||||||||||| ||||||| ||| |||||||||||||  |||||||||||    
T  21631180 agagaaacataaagcaaggtagttaagagtagatttaacacaagatttgttgagacatcatggatctagacatagaatcttcatctcttttcttcatcct 21631279  T
Q  361 atgcaaagctatca 374  Q
     || ||||||||||    
T  21631280 ttgtaaagctatca 21631293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 274 - 374
Target Start/End: Original strand, 32821812 - 32821912
Alignment:
Q  274 aaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgcaaagctatc 373  Q
    |||||||||| ||| || || |||||||| |||||||||||| | ||||| |||||| |||||||||||||||||||||| |||||| |  |||||||||    
T  32821812 aaagcaaggtattaggaatagattcaacccaagatttgttgataaatcatggatctatgcattgaatcttcatctcttctccatccttttaaaagctatc 32821911  T
Q  374 a 374  Q
    |    
T  32821912 a 32821912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 9932967 - 9932856
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||| |||||| |||| ||||| ||||||   |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  9932967 agagaaacacaaaacaaggtagttaggagtagattcaaggcaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 9932868  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  9932867 gcaaagctatca 9932856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 374
Target Start/End: Complemental strand, 13173978 - 13173867
Alignment:
Q  263 tagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctc--ttcttcatcct 360  Q
    |||| |||||||||| ||||||||| ||||| |||| ||| |||||||||||||| |||||   ||  ||||| |||||||||||||  |||||||||||    
T  13173978 tagaaaaacacaaagtaaggtgttaggagtagattctacccaagatttgttgagatatcatgagtc--ggcatggaatcttcatctcttttcttcatcct 13173881  T
Q  361 atgcaaagctatca 374  Q
     |||||||||||||    
T  13173880 ttgcaaagctatca 13173867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 374
Target Start/End: Complemental strand, 13182511 - 13182400
Alignment:
Q  263 tagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctc--ttcttcatcct 360  Q
    |||| |||||||||| ||||||||| ||||| |||| ||| |||||||||||||| |||||   ||  ||||| |||||||||||||  |||||||||||    
T  13182511 tagaaaaacacaaagtaaggtgttaggagtagattctacccaagatttgttgagatatcatgagtc--ggcatggaatcttcatctcttttcttcatcct 13182414  T
Q  361 atgcaaagctatca 374  Q
     |||||||||||||    
T  13182413 ttgcaaagctatca 13182400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 26510474 - 26510392
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttca 345  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||    
T  26510474 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttca 26510392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 6856341 - 6856437
Alignment:
Q  21 attggccacgtgaagaaactcttggagggtgtataaagaagtagatacaagtgggattggtttattggtcaat-gatagtaata--ttgttgtgttgacc 117  Q
    ||||||||| |||||||||| ||||||||||||||   ||||||| | ||||||| ||||| ||||||||||| ||||||||||  ||| ||||||||||    
T  6856341 attggccacatgaagaaacttttggagggtgtata---aagtagacataagtgggtttggtgtattggtcaatggatagtaatactttgatgtgttgacc 6856437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 13107031 - 13106938
Alignment:
Q  29 cgtgaagaaactcttggagggtgtataaagaagtagatacaagtgggattggttta-ttggtcaat-gatagtaatattgttgtgttgacccga 120  Q
    |||||||  ||| |||||||||||||||| ||  ||| ||||||||| |||||||| ||||||||| |||||||| | ||| ||||||||||||    
T  13107031 cgtgaaggcacttttggagggtgtataaacaaacagacacaagtgggcttggtttatttggtcaatggatagtaacaatgtggtgttgacccga 13106938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 348
Target Start/End: Original strand, 26604339 - 26604424
Alignment:
Q  264 agagaaacacaaagcaagg-tgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatct 348  Q
    ||||||||||||||||||| |||||  |||| ||||  || ||||||||||||||||||||  ||||  |||| ||||||||||||    
T  26604339 agagaaacacaaagcaagggtgttagaagtagattcttcccaagatttgttgagacatcatgaatcttagcatggaatcttcatct 26604424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 254 - 374
Target Start/End: Complemental strand, 8996433 - 8996313
Alignment:
Q  254 tgacatttctagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttct 353  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  8996433 tgacatttctagagaaacacaaagcaaggtgttaggagtagattcaacccaagatttgttgcgacatcatggatctaggcattgaatcttcatctcttct 8996334  T
Q  354 tcatcctatgcaaagctatca 374  Q
    ||||||| |||||||||||||    
T  8996333 tcatcctttgcaaagctatca 8996313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 11738959 - 11738848
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||| ||||||| ||||| | ||| |||||||||||| ||||||||||| |    
T  11738959 agagaaacacaaagcaaggtagttaggagtaaattcaagccaagatttgttgacacatcatggatcttgtcatggaatcttcatcttttcttcatccttt 11738860  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  11738859 gcaaagctatca 11738848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 13218207 - 13218096
Alignment:
Q  264 agagaaacacaaagcaaggtg-ttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||||||||||| ||| ||||| |||||| | |||||||||||||||||||| || || | ||| |||||||||||| ||||||||||| |    
T  13218207 agagaaacacaaagcaaggtggttaggagtagattcaagccaagatttgttgagacatcatggaacttgtcatggaatcttcatcttttcttcatccttt 13218108  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  13218107 gcaaagctatca 13218096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 16129659 - 16129770
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||| | |||| ||||| |||||| | |||||||||||||||||||| ||||| | |||||||||||||| ||||||||||| | |    
T  16129659 agagaaacacaaagcaagatagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcttcatcattt 16129758  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  16129759 gcaaagctatca 16129770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 41000265 - 41000154
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | |||||||||||||| ||||| ||||||| |    
T  41000265 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcctcatccttt 41000166  T
Q  363 gcaaagctatca 374  Q
    ||||| ||||||    
T  41000165 gcaaatctatca 41000154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 9667857 - 9667746
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||| |||| ||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||| ||||||||||| |    
T  9667857 agagaaatacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatccttt 9667758  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  9667757 gcaaagctatca 9667746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 33492360 - 33492249
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  33492360 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 33492261  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  33492260 gcaaagctatca 33492249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 38122094 - 38121983
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  38122094 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 38121995  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  38121994 gcaaagctatca 38121983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 39001343 - 39001232
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  39001343 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 39001244  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  39001243 gcaaagctatca 39001232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 44505432 - 44505321
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | || ||||||||||||||||| ||||  | ||| |||||||||||| ||||||||||| |    
T  44505432 agagaaacacaaagcaaggtagttaggagtagattcaagccaaaatttgttgagacatcatggatcatgtcatggaatcttcatcttttcttcatccttt 44505333  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  44505332 gcaaagctatca 44505321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 12168378 - 12168267
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| | ||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  12168378 agagaaacacaaagcaaggtagttaggtgtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccatttcttcatccttt 12168279  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  12168278 gcaaagctatca 12168267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 16832944 - 16832833
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||| ||||| |||| ||||| |||||| | |||||||||||||||||||| |||||   |||  ||||||||||| ||||||||||| |    
T  16832944 agagaaacacaaagtaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttatcatgaaatcttcatcttttcttcatccttt 16832845  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  16832844 gcaaagctatca 16832833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 49249072 - 49249183
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||| ||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  49249072 agagaaacacaaagtaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 49249171  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  49249172 gcaaagctatca 49249183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 432502 - 432391
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||| |||| ||||||| |||| ||||| | |||| | ||||||||||||||||||||  |||| | ||| |||||||||||| ||||||||||| |    
T  432502 agagaaatacaaggcaaggtagttaggagtagactcaagccaagatttgttgagacatcatgaatcttgtcatggaatcttcatcttttcttcatccttt 432403  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  432402 gcaaagctatca 432391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 374
Target Start/End: Original strand, 15161087 - 15161213
Alignment:
Q  250 gagatgacatttctagag--aaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatc 347  Q
    |||||| |||||||||||  |||||||||||||| | ||| ||||| ||||  || ||||||||||||||||||||  ||||  || | ||||||||||     
T  15161087 gagatggcatttctagagagaaacacaaagcaagatattaggagtagattcttcccaagatttgttgagacatcatgaatcttagcttggaatcttcata 15161186  T
Q  348 tcttcttcatcctatgcaaagctatca 374  Q
    | ||||||||||| |||||||||||||    
T  15161187 ttttcttcatcctctgcaaagctatca 15161213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 16130254 - 16130324
Alignment:
Q  304 aagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgcaaagctatca 374  Q
    |||||||||||||||||||| ||||| | |||||||||||||| ||||||||||| | ||||||| |||||    
T  16130254 aagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcttcatcatttgcaaagttatca 16130324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 36080220 - 36080279
Alignment:
Q  264 agagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcat 323  Q
    |||||||||||||||||||||||| ||||| |||| | | |||| |||||||||||||||    
T  36080220 agagaaacacaaagcaaggtgttaggagtagattctatccaagacttgttgagacatcat 36080279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 13830288 - 13830392
Alignment:
Q  264 agagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatg 363  Q
    |||||||||||| | | ||||||| ||||| ||||  |||||||||||||||||| ||||  ||||  ||||  ||||||||| | |  |||||||| ||    
T  13830288 agagaaacacaaggaagggtgttaggagtagattcttcctaagatttgttgagacgtcatgaatcttagcatgaaatcttcatttttctttcatcctttg 13830387  T
Q  364 caaag 368  Q
    |||||    
T  13830388 caaag 13830392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 257 - 374
Target Start/End: Complemental strand, 12370 - 12253
Alignment:
Q  257 catttctagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttca 356  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  12370 catttctagagaaacacaaagcaaggtgttaggagtagattcaacccaagatttattgagacatcatgaatctaggcattgaatcttcatctcttcttca 12271  T
Q  357 tcctatgcaaagctatca 374  Q
    |||| |||||||||||||    
T  12270 tcctttgcaaagctatca 12253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 257 - 374
Target Start/End: Complemental strand, 16140 - 16023
Alignment:
Q  257 catttctagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttca 356  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  16140 catttctagagaaacacaaagcaaggtgttaggagtagattcaacccaagatttattgagacatcatgaatctaggcattgaatcttcatctcttcttca 16041  T
Q  357 tcctatgcaaagctatca 374  Q
    |||| |||||||||||||    
T  16040 tcctttgcaaagctatca 16023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 257 - 374
Target Start/End: Original strand, 12188 - 12305
Alignment:
Q  257 catttctagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttca 356  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  12188 catttctagagaaacacaaagcaaggtgttaggagtagattcaacccaagatttattgagacatcatgaatctaggcattgaatcttcatctcttcttca 12287  T
Q  357 tcctatgcaaagctatca 374  Q
    |||| |||||||||||||    
T  12288 tcctttgcaaagctatca 12305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 257 - 374
Target Start/End: Original strand, 13509957 - 13510074
Alignment:
Q  257 catttctagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttca 356  Q
    ||||||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  13509957 catttctagagaaacacaaagcaagatgttagaagtagattcaacctaagatttgttgagacatcatggatctaggcattgaatcttcatcttttcttca 13510056  T
Q  357 tcctatgcaaagctatca 374  Q
    |||| |||||||||||||    
T  13510057 tcctttgcaaagctatca 13510074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 257 - 374
Target Start/End: Original strand, 13599487 - 13599604
Alignment:
Q  257 catttctagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttca 356  Q
    ||||||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  13599487 catttctagagaaacacaaagcaagatgttagaagtagattcaacctaagatttgttgagacatcatggatctaggcattgaatcttcatcttttcttca 13599586  T
Q  357 tcctatgcaaagctatca 374  Q
    |||| |||||||||||||    
T  13599587 tcctttgcaaagctatca 13599604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 247 - 374
Target Start/End: Complemental strand, 22243423 - 22243295
Alignment:
Q  247 agagagatgacatttctagagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttca 345  Q
    |||||||||||||||||||||||||||||| |||||| ||||  |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  22243423 agagagatgacatttctagagaaacacaaaacaaggtagttagaagtagattcaacccaagatttgttgagacatcatggatctaggcattgaatcttca 22243324  T
Q  346 tctcttcttcatcctatgcaaagctatca 374  Q
    ||| ||||||||||| |||||||||||||    
T  22243323 tcttttcttcatcctttgcaaagctatca 22243295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 263 - 374
Target Start/End: Complemental strand, 22234013 - 22233902
Alignment:
Q  263 tagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||  |||||||||| |||||||||||| ||||||||||| |    
T  22234013 tagagaaacacaaagcaaggtgttaggagtagattctacccaagatttgttgagacatcatgaatctaggcatggaatcttcatcttttcttcatccttt 22233914  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  22233913 gcaaagctatca 22233902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 16958550 - 16958661
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||   ||||||||| |||||||||||| ||||||||||| |    
T  16958550 agagaaacacaaagcaaggtagttaagagtagattcaacccaagatttgttgagacatcatgagtctaggcatggaatcttcatcttttcttcatccttt 16958649  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  16958650 gcaaagctatca 16958661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 263 - 374
Target Start/End: Complemental strand, 22222829 - 22222716
Alignment:
Q  263 tagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctc--ttcttcatcct 360  Q
    ||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||  |||||||||| |||||||||||||  |||||||||||    
T  22222829 tagagaaacacaaagcaaggtgttaggagtagattctacccaagatttgttgagacatcatgaatctaggcatggaatcttcatctcttttcttcatcct 22222730  T
Q  361 atgcaaagctatca 374  Q
     |||||||||||||    
T  22222729 ttgcaaagctatca 22222716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 263 - 374
Target Start/End: Complemental strand, 22229171 - 22229058
Alignment:
Q  263 tagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctc--ttcttcatcct 360  Q
    ||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||  |||||||||| |||||||||||||  |||||||||||    
T  22229171 tagagaaacacaaagcaaggtgttaggagtagattctacccaagatttgttgagacatcatgaatctaggcatggaatcttcatctcttttcttcatcct 22229072  T
Q  361 atgcaaagctatca 374  Q
     |||||||||||||    
T  22229071 ttgcaaagctatca 22229058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 370
Target Start/End: Original strand, 1607284 - 1607392
Alignment:
Q  263 tagagaaacacaaagcaagg-tgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatccta 361  Q
    |||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||  ||||  |||| |||||||||||| |  ||||||||     
T  1607284 tagagaaacacaaagcaagggtgttaagagtatattcttcctaagatttgttgagacatcatgaatcttagcatggaatcttcatctttctttcatcctt 1607383  T
Q  362 tgcaaagct 370  Q
    |||||||||    
T  1607384 tgcaaagct 1607392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 8743445 - 8743334
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  8743445 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 8743346  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  8743345 gcaaagctatca 8743334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 9068329 - 9068218
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  9068329 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 9068230  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  9068229 gcaaagctatca 9068218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 16580085 - 16580196
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  16580085 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 16580184  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  16580185 gcaaagctatca 16580196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 22180601 - 22180712
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||| |||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||  ||||||||||| |    
T  22180601 agagaaacaaaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcctttcttcatccttt 22180700  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  22180701 gcaaagctatca 22180712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 28370093 - 28370204
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  28370093 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 28370192  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  28370193 gcaaagctatca 28370204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 28926305 - 28926194
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  28926305 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 28926206  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  28926205 gcaaagctatca 28926194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 41577493 - 41577382
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  41577493 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 41577394  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  41577393 gcaaagctatca 41577382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 373
Target Start/End: Original strand, 12538157 - 12538267
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||| |||||| |||| || || |||||| ||| ||||||||||||||||||  |||| | |||||||||||||||||||||||||| | |    
T  12538157 agagaaacacaaatcaaggtagttaggattagattcaagctatgatttgttgagacatcatgaatcttgtcattgaatcttcatctcttcttcatcattt 12538256  T
Q  363 gcaaagctatc 373  Q
    |||||||||||    
T  12538257 gcaaagctatc 12538267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 374
Target Start/End: Original strand, 17992876 - 17993005
Alignment:
Q  248 gagagatgacatttctagaga--aacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttc 344  Q
    |||||||| ||||||||||||  ||||||| ||||||| |||||||||| |||||| | ||||||  ||||||||||||  |||| | ||| ||||||||    
T  17992876 gagagatggcatttctagagagaaacacaaggcaaggtagttaagagtagattcaatccaagattcattgagacatcatgaatcttgtcatggaatcttc 17992975  T
Q  345 atctcttcttcatcctatgcaaagctatca 374  Q
    |||| ||||||||||| |||||||||||||    
T  17992976 atcttttcttcatcctttgcaaagctatca 17993005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 3298802 - 3298913
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||  |    
T  3298802 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcaccctttcttcatccatt 3298901  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  3298902 gcaaagctatca 3298913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 4862112 - 4862001
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||| | ||||| |||||||||| |||||||| ||||||  ||||||||||||  |||| | ||| |||||||||||| ||||||||||| |    
T  4862112 agagaaacacaaggtaaggtagttaagagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttcatccttt 4862013  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  4862012 gcaaagctatca 4862001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 11309149 - 11309038
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||| || |  ||||||||||| |    
T  11309149 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatctccaccctttcttcatccttt 11309050  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  11309049 gcaaagctatca 11309038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 27348026 - 27348137
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  27348026 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 27348125  T
Q  363 gcaaagctatca 374  Q
    |||||| |||||    
T  27348126 gcaaagttatca 27348137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 290 - 374
Target Start/End: Original strand, 24040743 - 24040827
Alignment:
Q  290 agtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgcaaagctatca 374  Q
    |||| |||||| | |||||||||||||||||||| ||||| | |||||||||||||| ||||| ||||||| |||||||||||||    
T  24040743 agtagattcaagccaagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcctcatcctttgcaaagctatca 24040827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 347
Target Start/End: Complemental strand, 34006922 - 34006838
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatc 347  Q
    |||||||||||||||||||| |||| ||||| ||| || | |||||||||||||||||||| ||||| | ||| |||||||||||    
T  34006922 agagaaacacaaagcaaggtagttaggagtagattaaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatc 34006838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 32226823 - 32226914
Alignment:
Q  254 tgacatttctagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttca 345  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  32226823 tgacatttctagagaaacacaaagcaaggtgttaggagtagattcaacctaaaatttgttgagacatcatggatctaggcattgaatcttca 32226914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 27167259 - 27167148
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | ||||||||||| |||||||| ||||| | ||| |||||||||||| ||||||||||| |    
T  27167259 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgggacatcatggatcttgtcatggaatcttcatcttttcttcatccttt 27167160  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  27167159 gcaaagctatca 27167148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 34869908 - 34869797
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||| |||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||||||||||||||||||| ||||| || |    
T  34869908 agagaaacacaaaacaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcattgaatcttcatctcttattcattcttt 34869809  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  34869808 gcaaagctatca 34869797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 7314965 - 7315076
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  7314965 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 7315064  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  7315065 gcaaagctatca 7315076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 9404424 - 9404535
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  9404424 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 9404523  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  9404524 gcaaagctatca 9404535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 11723438 - 11723327
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  11723438 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 11723339  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  11723338 gcaaagctatca 11723327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 11766755 - 11766866
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  11766755 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 11766854  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  11766855 gcaaagctatca 11766866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 31845980 - 31846091
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  31845980 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 31846079  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  31846080 gcaaagctatca 31846091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 33434603 - 33434714
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  33434603 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 33434702  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  33434703 gcaaagctatca 33434714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 34456297 - 34456408
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  34456297 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 34456396  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  34456397 gcaaagctatca 34456408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 14344469 - 14344580
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||| ||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  14344469 agagaaactcaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 14344568  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  14344569 gcaaagctatca 14344580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 16904771 - 16904660
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| | ||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  16904771 agagaaacacaaagcaaggtagttaggggtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 16904672  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  16904671 gcaaagctatca 16904660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 30607238 - 30607127
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | || ||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  30607238 agagaaacacaaagcaaggtagttaggagtagattcaagccaatatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 30607139  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  30607138 gcaaagctatca 30607127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 374
Target Start/End: Complemental strand, 37252072 - 37251956
Alignment:
Q  257 catttctagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttca 356  Q
    ||||| |||||| ||||||| |||||||||| | ||| |||||||| ||||||| ||||||||||||   || ||| || |||||||||||| |||||||    
T  37252072 catttttagagagacacaaaacaaggtgttaggtgtagattcaacccaagatttattgagacatcatgagtcaagg-atggaatcttcatcttttcttca 37251974  T
Q  357 tcctatgcaaagctatca 374  Q
    |||| |||||||||||||    
T  37251973 tcctttgcaaagctatca 37251956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 39656214 - 39656115
Alignment:
Q  251 agatgacatttctagaga--aacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatct 348  Q
    ||||||||||||||||||  ||||||| | ||||||||| ||||| |||| ||  ||||||||||||||||||||  ||||||||||  |||||||||||    
T  39656214 agatgacatttctagagagaaacacaacgtaaggtgttaggagtagattctacaaaagatttgttgagacatcatgaatctaggcatgaaatcttcatct 39656115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 24835735 - 24835846
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||| |||||| |||| ||||| ||||||   | |||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  24835735 agagaaacacaaatcaaggtagttaggagtagattcaagtcaggatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 24835834  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  24835835 gcaaagctatca 24835846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 6269890 - 6270001
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||| || || |||| ||||| |||||| | ||||||||||| |||| ||| ||||| | ||  |||||||||| | ||||||||||| |    
T  6269890 agagaaacacaaagaaatgtagttatgagtagattcaagccaagatttgttgtgacaacatggatcttgtcaaggaatcttcatattttcttcatccttt 6269989  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  6269990 gcaaagctatca 6270001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 33247988 - 33248099
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||  || ||||||||||||||||||||||| |||||||| |    
T  33247988 agagaaacacaaagcaaggtagttaggagtagattcaacccaagatttgttgagacatcatgaatttaggcattgaatcttcatctctttttcatccttt 33248087  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  33248088 gcaaagctatca 33248099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 246 - 370
Target Start/End: Original strand, 2357141 - 2357267
Alignment:
Q  246 tagagagatgacatttcta--gagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatctt 343  Q
    |||||||||||||||||||  ||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||   |||||||||  ||||||    
T  2357141 tagagagatgacatttctatagagaaacacaaagcaagatgttaggagtagattcaacccaagatttgttgagacatcatgagtctaggcatgaaatctt 2357240  T
Q  344 catctcttcttcatcctatgcaaagct 370  Q
    ||||| |  |||||||| ||| |||||    
T  2357241 catctttctttcatcctttgccaagct 2357267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 45527647 - 45527758
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||| ||| ||||||| |    
T  45527647 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcatcatccttt 45527746  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  45527747 gcaaagctatca 45527758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 3588400 - 3588511
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  3588400 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 3588499  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  3588500 gcaaagctatca 3588511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 20837094 - 20837205
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||| |||| ||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||| ||||||||||| |    
T  20837094 agagaaatacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatccttt 20837193  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  20837194 gcaaagctatca 20837205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 27030845 - 27030734
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  27030845 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 27030746  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  27030745 gcaaagctatca 27030734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 36469596 - 36469486
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||| ||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||| ||||||||||| |    
T  36469596 agagaaacacaa-gcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcatcttttcttcatccttt 36469498  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  36469497 gcaaagctatca 36469486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 373
Target Start/End: Complemental strand, 7653384 - 7653274
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  7653384 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 7653285  T
Q  363 gcaaagctatc 373  Q
    |||||||||||    
T  7653284 gcaaagctatc 7653274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 8615503 - 8615614
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| |||||   ||| ||||||||| |  ||||||||||| |    
T  8615503 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttatcatggaatcttcaccctttcttcatccttt 8615602  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  8615603 gcaaagctatca 8615614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 9989396 - 9989507
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||| ||| |    
T  9989396 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcaccctttcttcaaccttt 9989495  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  9989496 gcaaagctatca 9989507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 10386232 - 10386121
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||| | | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  10386232 agagaaacacaaagcaaggtagttaggagtagattcgagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 10386133  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  10386132 gcaaagctatca 10386121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 22097667 - 22097778
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||| ||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  22097667 agagaaacacaaagtaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 22097766  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  22097767 gcaaagctatca 22097778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 27850711 - 27850601
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||| ||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||  ||||||||||| |    
T  27850711 agagaaacacaa-gcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcatttcttcatccttt 27850613  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  27850612 gcaaagctatca 27850601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 30046052 - 30046106
Alignment:
Q  66 tacaagtgggattggtttattggtcaatgatagtaatattgttgtgttgacccga 120  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30046052 tacaagtgggtttggtttattggtcaatgatagtaatattgttgtgttgacccga 30046106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 372
Target Start/End: Complemental strand, 1232676 - 1232544
Alignment:
Q  247 agagagatgacatttctagaga--aacacaaagcaa-----ggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaa 339  Q
    ||||||||||||||||||||||  ||||||||||||     ||||||| ||||| ||||     ||||||||||||||||||||  ||||||||||  ||    
T  1232676 agagagatgacatttctagagagaaacacaaagcaaaataaggtgttaggagtagattcttatcaagatttgttgagacatcatgaatctaggcatgaaa 1232577  T
Q  340 tcttcatctcttcttcatcctatgcaaagctat 372  Q
    |||| |||||||||||||||| |||||||||||    
T  1232576 tctttatctcttcttcatcctttgcaaagctat 1232544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 367
Target Start/End: Original strand, 23193923 - 23194027
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||| ||||||| |||||||||| |||||||| ||||||  ||||||||||||  |||| | ||| |||||||||||| ||||||||||| |    
T  23193923 agagaaacacaaggcaaggtagttaagagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttcatccttt 23194022  T
Q  363 gcaaa 367  Q
    |||||    
T  23194023 gcaaa 23194027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 23385396 - 23385507
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||| |||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||| || |  ||||||||||| |    
T  23385396 agagaaacaaaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatctacaccctttcttcatccttt 23385495  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  23385496 gcaaagctatca 23385507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 37471848 - 37471737
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||||||| || |||| ||||| |||||| | || ||||||||||||  ||| ||||| | ||| |||||||||||| ||||||||||| |    
T  37471848 agagaaacacaaagcaaagtagttaggagtagattcaagccaaaatttgttgagacgacatggatcttgtcatggaatcttcatcttttcttcatccttt 37471749  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  37471748 gcaaagctatca 37471737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 20963815 - 20963711
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | | | ||||||||||||  |||||||| | |    
T  20963815 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcgtggaatcttcatcttctcttcatcattt 20963716  T
Q  363 gcaaa 367  Q
    |||||    
T  20963715 gcaaa 20963711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 26335121 - 26335201
Alignment:
Q  268 aaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatc 347  Q
    |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||   |||||||||  ||||||||||    
T  26335121 aaacacaaagcaaggtagttaagagtagattcaacccaagatttgttgagacatcatgagtctaggcatgaaatcttcatc 26335201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 48168355 - 48168244
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||| ||||||||| |||| ||||| |||||| | |||||||||||||||||||  |||||   ||| |||||| |||||   |||||||||||    
T  48168355 agagaaacacgaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcagggatcttatcatggaatctgcatcttcacttcatcctat 48168256  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  48168255 gcaaagctatca 48168244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 373
Target Start/End: Complemental strand, 52308247 - 52308137
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||| | | || ||||||| ||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  52308247 agagaaacacaaagcaaggtagttaggagtagattctagccaatatttgtttagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 52308148  T
Q  363 gcaaagctatc 373  Q
    |||||||||||    
T  52308147 gcaaagctatc 52308137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 49434097 - 49434150
Alignment:
Q  264 agagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgaga 317  Q
    |||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||    
T  49434097 agagaaacacaaagcaaggtgttaggagtagattctacccaagatttgttgaga 49434150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 4743135 - 4743051
Alignment:
Q  290 agtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgcaaagctatca 374  Q
    |||| |||||| | |||||||||||||| ||||| ||||| | |||  ||||||||||| ||||||||| | |||||||||||||    
T  4743135 agtagattcaagccaagatttgttgagagatcatggatcttgtcatgaaatcttcatcttttcttcatcgtttgcaaagctatca 4743051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 36557684 - 36557573
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||| |||||||| |||| ||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |    
T  36557684 agagaaacacatagcaaggtagttaggagtagattcaacccaagatttgttgagacatcatggatctaggcatttaatcttcatcttttcttcatccttt 36557585  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  36557584 gcaaagctatca 36557573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 28458039 - 28457928
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||||  |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |    
T  28458039 agagaaacacaaagcaaggtagttaggagtagattcaactcaagatttgttaagacatcatggatctaggcattgaatcttcatcttttcttcatccttt 28457940  T
Q  363 gcaaagctatca 374  Q
    |||| |||||||    
T  28457939 gcaatgctatca 28457928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 36040424 - 36040313
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||| ||||||||||| |    
T  36040424 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatccttt 36040325  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  36040324 gcaaagctatca 36040313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 36668031 - 36667920
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| | | || | |||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| |    
T  36668031 agagaaacacaaagcaaggtagttaggagtagacttaagccaagatttgttgagacatcatggatcttgtcattgaatcttcatctcttcttcatccttt 36667932  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  36667931 gcaaagctatca 36667920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 23925193 - 23925082
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||  | ||| |||||||||||| ||||||||||| |    
T  23925193 agagaaacacaaagcaaggtagttaggagtagattcaagcgaagatttgttgagacatcatggatcatgtcatggaatcttcatcttttcttcatccttt 23925094  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  23925093 gcaaagctatca 23925082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 32522929 - 32523040
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | ||||||| |||||||||||| ||||| | |||||||||||||| |||||||| |||| |    
T  32522929 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttattgagacatcatggatcttgtcattgaatcttcatttcttcttcgtccttt 32523028  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  32523029 gcaaagctatca 32523040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 42702368 - 42702257
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||| |||||| |||| |    
T  42702368 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcctccttt 42702269  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  42702268 gcaaagctatca 42702257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 29223715 - 29223826
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  29223715 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 29223814  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  29223815 gcaaagctatca 29223826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 29337014 - 29337125
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  29337014 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 29337113  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  29337114 gcaaagctatca 29337125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 5784686 - 5784575
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||  |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  5784686 agagaaacacaaagcaaggaagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 5784587  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  5784586 gcaaagctatca 5784575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 13230503 - 13230392
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||||| ||||||  ||||||||||||  |||| | ||| |||||||||||| ||||||||||| |    
T  13230503 agagaaacacaaagcaaggtagttatgagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttcatccttt 13230404  T
Q  363 gcaaagctatca 374  Q
     |||||||||||    
T  13230403 acaaagctatca 13230392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 14700645 - 14700752
Alignment:
Q  268 aaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgcaa 366  Q
    |||||||||||||||| |||||||||| |||||||| |||||||||||||||||| |   ||||||||  ||| |||||| | ||||||||||| |||||    
T  14700645 aaacacaaagcaaggtagttaagagtagattcaacccaagatttgttgagacatcttgagtctaggcaaggaaacttcatattttcttcatcctttgcaa 14700744  T
Q  367 agctatca 374  Q
    ||||||||    
T  14700745 agctatca 14700752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 27257385 - 27257496
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||| |||||| |||  ||| | ||| |||| ||||||  ||||||||||||  |||||||||| |||||||||||| ||||||||||| |    
T  27257385 agagaaacacaaaacaaggtagtttggaggagatttaacccaagattcattgagacatcatgaatctaggcatggaatcttcatcttttcttcatccttt 27257484  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  27257485 gcaaagctatca 27257496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 21160006 - 21160076
Alignment:
Q  304 aagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgcaaagctatca 374  Q
    ||||||||||||||||||||  ||||||||||  ||||||||||||||||||||| | |||||||||||||    
T  21160006 aagatttgttgagacatcatgaatctaggcatgaaatcttcatctcttcttcatcttttgcaaagctatca 21160076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 492739 - 492798
Alignment:
Q  264 agagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcat 323  Q
    ||||||||||||| |||||||||| ||||| |||| ||| ||||||||||||||||||||    
T  492739 agagaaacacaaatcaaggtgttaggagtagattctacccaagatttgttgagacatcat 492798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 370
Target Start/End: Complemental strand, 24663293 - 24663186
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| |||||  ||||  | ||||||||||||||||||||  ||||  ||||||||||||||||| |  |||||||| |    
T  24663293 agagaaacacaaagcaaggttgttaggagtagtttcataccaagatttgttgagacatcatgaatcttagcattgaatcttcatctttctttcatccttt 24663194  T
Q  363 gcaaagct 370  Q
    || |||||    
T  24663193 gcgaagct 24663186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 329
Target Start/End: Complemental strand, 8687835 - 8687769
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatct 329  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| |||||    
T  8687835 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatct 8687769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 9787227 - 9787157
Alignment:
Q  304 aagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgcaaagctatca 374  Q
    |||||||||||||| |||||  ||||||||||  ||||||||| | ||||||||||| |||||||||||||    
T  9787227 aagatttgttgagatatcatgaatctaggcatgaaatcttcatattttcttcatcctttgcaaagctatca 9787157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 374
Target Start/End: Original strand, 43991533 - 43991636
Alignment:
Q  266 agaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgc 364  Q
    |||||||||| ||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||      ||||||||||| |||    
T  43991533 agaaacacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatctt------ttcttcatcctttgc 43991626  T
Q  365 aaagctatca 374  Q
    ||||||||||    
T  43991627 aaagctatca 43991636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1832 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold1832
Description:

Target: scaffold1832; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 132 - 21
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||| |||||||||||| |||  ||||| |||||||  |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |    
T  132 agagaaagacaaagcaaggtagttgggagtagattcaacacaagatttgttgagacatcatggatctaggcattgaatcttcctctcttcttcatccttt 33  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  32 gcaaagctatca 21  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 26069725 - 26069836
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| ||||  |||| |||||| | |||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||| |    
T  26069725 agagaaacacaaagcaaggtagttagaagtagattcaagccaagatttgttgagacatcatggatcttgtcattgaatcttcaactcttcttcatccttt 26069824  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  26069825 gcaaagctatca 26069836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 30218553 - 30218442
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||   ||||||||| |||||||||||| |||||||||||      
T  30218553 agagaaacacaaagcaaggtagttaagagtagattcaacccaagatttgttgagacgtcatgagtctaggcatggaatcttcatcttttcttcatcctta 30218454  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  30218453 gcaaagctatca 30218442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 40995711 - 40995600
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||| |||||| |||| ||||| |||||| | |||||||||||||||||||| |||||   |||||||||||||||||||||||||||| |    
T  40995711 agagaaacacaaatcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttatcattgaatcttcatctcttcttcatccttt 40995612  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  40995611 gcaaagctatca 40995600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 247 - 373
Target Start/End: Complemental strand, 33110884 - 33110755
Alignment:
Q  247 agagagatgacatttctagaga--aacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatctt 343  Q
    ||||||||||||||||||||||  ||||||| ||||||| |||||||||| |||||||| ||||||||||||||||||||  || |||||||   |||||    
T  33110884 agagagatgacatttctagagagaaacacaaggcaaggtagttaagagtagattcaacccaagatttgttgagacatcatgaatttaggcatgacatctt 33110785  T
Q  344 catctcttcttcatcctatgcaaagctatc 373  Q
    ||||| || |||||||| ||||||||||||    
T  33110784 catctttttttcatcctttgcaaagctatc 33110755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 20948745 - 20948856
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| ||||| |||| |||||||| ||||||||| ||||||||||  |||||||||| |||||||||||| ||||||||||| |    
T  20948745 agagaaacacaaagcaaggtagttaaaagtagattcaacccaagatttgtcgagacatcatgaatctaggcatggaatcttcatcttttcttcatccttt 20948844  T
Q  363 gcaaagctatca 374  Q
    |  |||||||||    
T  20948845 gtcaagctatca 20948856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 284 - 374
Target Start/End: Original strand, 53895400 - 53895490
Alignment:
Q  284 gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgcaaagctatca 374  Q
    ||||| |||| |||||||| ||||||||||||||||||||  |||||||||| || ||||||||||||||||||||| |||||||||||||    
T  53895400 gttaaaagtagattcaacccaagatttgttgagacatcatgaatctaggcatggagtcttcatctcttcttcatcctttgcaaagctatca 53895490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 374
Target Start/End: Complemental strand, 46692196 - 46692087
Alignment:
Q  266 agaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctatgc 364  Q
    |||||||||||||||||| |||| ||||| |||||| | ||||||||||||||||||||  |||| | |||||||||||||| ||||| ||||||| |||    
T  46692196 agaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatgaatcttgtcattgaatcttcatttcttcctcatcctttgc 46692097  T
Q  365 aaagctatca 374  Q
    ||||||||||    
T  46692096 aaagctatca 46692087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 4839298 - 4839187
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  4839298 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 4839199  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  4839198 gcaaagctatca 4839187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 323438 - 323549
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||| | |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  323438 agagaaacacaaagcaagatagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 323537  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  323538 gcaaagctatca 323549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 1187965 - 1188076
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| ||||||   ||||||||||||||||||||  |||| | |||  ||||||||||| ||||||||||| |    
T  1187965 agagaaacacaaagcaaggtagttaggagtagattcaagtcaagatttgttgagacatcatgaatcttgtcatgaaatcttcatcttttcttcatccttt 1188064  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  1188065 gcaaagctatca 1188076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 19247989 - 19247878
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||  ||||| |||||| | || |||||||||||||||||  |||| | ||| |||||||||||| ||||||||||| |    
T  19247989 agagaaacacaaagcaaggtagttgggagtagattcaaaccaatatttgttgagacatcatgaatcttgtcatggaatcttcatcttttcttcatccttt 19247890  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  19247889 gcaaagctatca 19247878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 21677829 - 21677718
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||||||| || |||| || || |||||||| ||||||  ||||||||||||  ||||||||||  ||||||||||| ||||||||||| |    
T  21677829 agagaaacacaaagcaaagtagttaggaatagattcaacccaagattcattgagacatcatgaatctaggcataaaatcttcatcttttcttcatccttt 21677730  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  21677729 gcaaagctatca 21677718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 26373791 - 26373680
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | || ||||||||||| ||||| |||||   |||||||||||||| ||||||| ||||| |    
T  26373791 agagaaacacaaagcaaggtagttaggagtagattcaagccaatatttgttgagatatcatggatcttatcattgaatcttcatttcttctttatccttt 26373692  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  26373691 gcaaagctatca 26373680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 42533049 - 42532938
Alignment:
Q  264 agagaaacacaaagcaaggtg-ttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||||||||||||||||| ||| ||||| |||||| |  |||||||||||||| |||| ||||| | ||| |||||||||||| ||||||||| | |    
T  42533049 agagaaacacaaagcaaggtggttaggagtagattcaagcctagatttgttgagacgtcatggatcttgtcatggaatcttcatcttttcttcatcattt 42532950  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  42532949 gcaaagctatca 42532938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 22047681 - 22047792
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||| | |||||| | ||||||||||||||||| || ||||| | ||| ||||||||| |  ||||||||||| |    
T  22047681 agagaaacacaaagcaaggtagttaggagaagattcaagccaagatttgttgagacattatggatcttgtcatggaatcttcaccctttcttcatccttt 22047780  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  22047781 gcaaagctatca 22047792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 44432215 - 44432104
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||| ||||||||||| |||| ||||| |||||| | ||||||| |||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  44432215 agagaaactcaaagcaaggtagttaggagtagattcaagccaagatttcttgagacatcatggatcttgccatggaatcttcaccctttcttcatccttt 44432116  T
Q  363 gcaaagctatca 374  Q
     |||||||||||    
T  44432115 acaaagctatca 44432104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 347
Target Start/End: Complemental strand, 5273713 - 5273629
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatc 347  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| || ||||||||    
T  5273713 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggattcttcatc 5273629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 55326774 - 55326887
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagta--tattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcct 360  Q
    ||||||||||| |||||| | |||| |||||  ||||||||| ||||||  ||||||||||||  ||||||||||  ||||||||||| ||||||||||     
T  55326774 agagaaacacatagcaagatagttaggagtagatattcaacccaagattcattgagacatcatgaatctaggcatgaaatcttcatcttttcttcatcca 55326873  T
Q  361 atgcaaagctatca 374  Q
     | |||||||||||    
T  55326874 ttccaaagctatca 55326887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 52618514 - 52618598
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatc 347  Q
    |||||||||||||||||||| |||| ||||| |||||||| ||||||  ||||||||||||  |||| | ||| |||||||||||    
T  52618514 agagaaacacaaagcaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatc 52618598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 348
Target Start/End: Complemental strand, 35416845 - 35416760
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatct 348  Q
    |||||||||||||| ||| | |||| ||||| |||||| | |||||||||||||||||||| ||||| | |||  |||||||||||    
T  35416845 agagaaacacaaagaaagatagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatgaaatcttcatct 35416760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 374
Target Start/End: Original strand, 14178 - 14295
Alignment:
Q  257 catttctagagaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttca 356  Q
    |||||||||||| |||||||||||||||||| ||||| |||||||  ||||||||||||||||||||   | |||| || |||||||||||| || ||||    
T  14178 catttctagagagacacaaagcaaggtgttaggagtagattcaactcaagatttgttgagacatcatgagtttagggatggaatcttcatctttttttca 14277  T
Q  357 tcctatgcaaagctatca 374  Q
    |||| |||||||||||||    
T  14278 tcctttgcaaagctatca 14295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 116729 - 116618
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||| |||||| ||||||||||| |    
T  116729 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcctcatcttttcttcatccttt 116630  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  116629 gcaaagctatca 116618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 373
Target Start/End: Complemental strand, 16635 - 16525
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||| ||||| |||||||||| |||| ||| ||||||||||||||||||||  ||||||||||  ||||||||||| ||||||||||| |    
T  16635 agagaaacacaaagtaaggtagttaagagtagattctacccaagatttgttgagacatcatgaatctaggcatgaaatcttcatcttttcttcatccttt 16536  T
Q  363 gcaaagctatc 373  Q
    || ||||||||    
T  16535 gccaagctatc 16525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 29061 - 28950
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  29061 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 28962  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  28961 gcaaagctatca 28950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 6732 - 6843
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    ||||||| |||| ||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| |||||||||||| ||||||||||| |    
T  6732 agagaaatacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatccttt 6831  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  6832 gcaaagctatca 6843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 25812 - 25701
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  25812 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 25713  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  25712 gcaaagctatca 25701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 76613 - 76502
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  76613 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcaacaattcttcatccttt 76514  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  76513 gcaaagctatca 76502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 254 - 376
Target Start/End: Complemental strand, 1157 - 1033
Alignment:
Q  254 tgacatttctagaga--aacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctctt 351  Q
    |||||||||||||||  ||||||||| ||||||||| ||||| |||| | | ||||||||||||||||||||   ||||||||| |||| ||||| ||||    
T  1157 tgacatttctagagagaaacacaaagtaaggtgttaggagtagattctatccaagatttgttgagacatcatgagtctaggcatggaattttcatatctt 1058  T
Q  352 cttcatcctatgcaaagctatcaca 376  Q
    |||| |||| ||||||| |||||||    
T  1057 cttcgtcctttgcaaagttatcaca 1033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 1564 - 1675
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||| |||||   ||| ||||||||| |  ||||||||||| |    
T  1564 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttatcatggaatcttcaccctttcttcatccttt 1663  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  1664 gcaaagctatca 1675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 8742 - 8853
Alignment:
Q  264 agagaaacacaaagcaaggt-gttaagagtatattcaacctaagatttgttgagacatcatagatctaggcattgaatcttcatctcttcttcatcctat 362  Q
    |||||||||||| ||||||| |||| ||||| |||||| | |||||||||||||||||||| ||||| | ||| ||||||||| |  ||||||||||| |    
T  8742 agagaaacacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcaccctttcttcatccttt 8841  T
Q  363 gcaaagctatca 374  Q
    ||||||||||||    
T  8842 gcaaagctatca 8853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 35458 - 35388
Alignment:
Q  251 agatgacatttctag-agaaacacaaagcaaggtgttaagagtatattcaacctaagatttgttgagacat 320  Q
    ||||| ||||||||| |||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||    
T  35458 agatggcatttctaggagaaacacaaagcaaggtgttaggagtagattctacccaagatttgttgagacat 35388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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