View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10742_low_9 (Length: 381)
Name: NF10742_low_9
Description: NF10742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10742_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 49131526 - 49131891
Alignment:
| Q |
1 |
gatgttgagaatggacatgaaaatacacatagagatttacaagagcccttcattcaacatggaaaggatgctactgttgactatcatgatattgaatcta |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49131526 |
gatgttgagagtggacatgaaaatacacatagagatttacaagagcccttcattcaacatggaaaggatgctactgttgactatcatgatattgaatcta |
49131625 |
T |
|
| Q |
101 |
ataaaagggctgaaaatggatccattggaatggttctgctcagcacatttgttgctgtttgtggttctttttcatttggaacttgtgtaagtttcttttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49131626 |
ataaaagggctgaaaatggatccattggaatggttctgctcagcacatttgttgctgtttgcggttctttttcatttggaacttgtgtaagtttcttttg |
49131725 |
T |
|
| Q |
201 |
aattttcttaaaattataatatggtgcatttttagctgagagctattattttggcaggtgggatattcatcacccactcaagcagctatcagggcagatc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49131726 |
aattttcttaaaattataatatggtgcatttttagctgaaagctattattttggcaggtgggatattcatcacccactcaagcagctatcagggcagatc |
49131825 |
T |
|
| Q |
301 |
ttaatctatctatctctgaggttagtattccaaatgaaaatgtcaatgaggaggggaatttgcacc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49131826 |
ttaatctatctatctctgaggttagtattccaaatgaaaatgtcaatgaggaggggaatttgcacc |
49131891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 6922509 - 6922589
Alignment:
| Q |
112 |
gaaaatggatccattggaatggttctgctcagcacatttgttgctgtttgtggttctttttcatttggaacttgtgtaagt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6922509 |
gaaaatggatccattggaatggttctgcttagcacatttgttgctgtttgtggttctttttcatttggaacttgtgtaagt |
6922589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 6923009 - 6923065
Alignment:
| Q |
255 |
caggtgggatattcatcacccactcaagcagctatcagggcagatcttaatctatct |
311 |
Q |
| |
|
|||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
6923009 |
caggtgggttattcagcacccactcaagcggctatcagggctgatcttaatctatct |
6923065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University