View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10743_2 (Length: 491)

Name: NF10743_2
Description: NF10743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10743_2
NF10743_2
[»] chr4 (9 HSPs)
chr4 (146-461)||(28146785-28147101)
chr4 (146-464)||(55606294-55606600)
chr4 (172-442)||(25967825-25968102)
chr4 (148-441)||(38411936-38412227)
chr4 (271-463)||(13198129-13198317)
chr4 (149-399)||(11440396-11440648)
chr4 (370-464)||(46308399-46308491)
chr4 (262-338)||(46308490-46308565)
chr4 (212-373)||(30839651-30839812)
[»] chr1 (11 HSPs)
chr1 (148-420)||(32617658-32617930)
chr1 (149-372)||(12990144-12990370)
chr1 (277-426)||(9457554-9457704)
chr1 (277-426)||(9461651-9461801)
chr1 (306-428)||(34664745-34664867)
chr1 (236-385)||(14081826-14081977)
chr1 (366-464)||(12990541-12990636)
chr1 (330-399)||(24699906-24699975)
chr1 (172-271)||(9457470-9457570)
chr1 (172-271)||(9461567-9461667)
chr1 (146-253)||(35811729-35811835)
[»] chr5 (11 HSPs)
chr5 (146-458)||(19967310-19967616)
chr5 (174-442)||(41283320-41283593)
chr5 (168-390)||(36491323-36491545)
chr5 (311-440)||(13424704-13424834)
chr5 (304-401)||(16341520-16341621)
chr5 (311-423)||(39426174-39426288)
chr5 (306-424)||(22927149-22927269)
chr5 (243-399)||(20141659-20141814)
chr5 (145-297)||(39426464-39426614)
chr5 (144-222)||(13424880-13424958)
chr5 (338-382)||(14355007-14355051)
[»] chr7 (8 HSPs)
chr7 (172-442)||(25635970-25636241)
chr7 (277-462)||(47363753-47363936)
chr7 (340-429)||(39653536-39653626)
chr7 (190-442)||(10493476-10493730)
chr7 (315-425)||(45435368-45435478)
chr7 (338-396)||(33049114-33049172)
chr7 (338-396)||(31742876-31742934)
chr7 (145-222)||(47363960-47364036)
[»] chr8 (9 HSPs)
chr8 (296-442)||(23490036-23490182)
chr8 (173-251)||(23490207-23490286)
chr8 (313-399)||(7154379-7154465)
chr8 (338-397)||(14867365-14867424)
chr8 (5-59)||(41476313-41476367)
chr8 (173-270)||(10473867-10473968)
chr8 (237-383)||(45191664-45191814)
chr8 (192-251)||(773692-773752)
chr8 (146-206)||(14867560-14867620)
[»] chr2 (8 HSPs)
chr2 (277-464)||(37794699-37794884)
chr2 (145-435)||(35016455-35016753)
chr2 (277-464)||(17989035-17989221)
chr2 (228-392)||(19263659-19263824)
chr2 (225-399)||(5428526-5428700)
chr2 (144-251)||(17989225-17989333)
chr2 (147-209)||(20929783-20929845)
chr2 (227-288)||(31806161-31806222)
[»] chr3 (6 HSPs)
chr3 (148-423)||(7298926-7299192)
chr3 (256-439)||(11783476-11783659)
chr3 (308-399)||(19596549-19596639)
chr3 (351-399)||(21926545-21926593)
chr3 (185-251)||(50263002-50263069)
chr3 (338-382)||(46475579-46475623)
[»] chr6 (6 HSPs)
chr6 (225-399)||(32296249-32296423)
chr6 (297-429)||(10117121-10117257)
chr6 (146-332)||(8169126-8169312)
chr6 (321-384)||(9177570-9177633)
chr6 (303-397)||(22509045-22509138)
chr6 (354-399)||(8546250-8546295)
[»] scaffold0989 (1 HSPs)
scaffold0989 (150-231)||(2084-2165)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 146 - 461
Target Start/End: Original strand, 28146785 - 28147101
Alignment:
Q  146 caaggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaa 244  Q
    |||||||||||||||| ||   |||  |||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||| |||||||||    
T  28146785 caaggttttaaaaaacggtctgttacggagaaaaaggccgcaacaaaaaggtataggtagcggacattaccgtttttcaccgtttttacagagtgaacaa 28146884  T
Q  245 aaatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaatt---gccgtttatgacaataaacatagaatccggatattttt 341  Q
    ||||||| |||||||| |||||||||   || |||||||| ||||||| ||||||||     |||||| ||||||||| |||||||||| ||||||||||    
T  28146885 aaatcacgacaaaacgtcgttacagctgcgacgaaacaccgttacggccgcaaaaaaaaaaggccgttcatgacaatagacatagaatctggatattttt 28146984  T
Q  342 tcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataagttaactccttatcttgtttagaactccaagtctttctctag 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||| |||||| ||||    
T  28146985 tcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataagttatctccttatctaatttagaattccaaatctttccctag 28147084  T
Q  442 taatttaagttatctaagtt 461  Q
       |||||||||| ||||||    
T  28147085 ---tttaagttatttaagtt 28147101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 146 - 464
Target Start/End: Complemental strand, 55606600 - 55606294
Alignment:
Q  146 caaggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttacaagtgaacaaa 245  Q
    ||||||| |||||||||||   ||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||| | |        ||||||||||    
T  55606600 caaggttctaaaaaacagtccgttaccgagaaaaaggcc-cgacaaaaaggtataggtagtggacgttaccgtttttcactg--------agtgaacaaa 55606510  T
Q  246 aatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatattttttcaa 345  Q
    |||||| || |||| |||||||||||  ||||||||||| ||||||| |||||||| | | ||| ||||||||| |||| ||||||  ||||||||||||    
T  55606509 aatcacgacgaaacaccgttacagccgcgatgaaacaccgttacggccgcaaaaaaattctgttcatgacaatagacatggaatccaaatattttttcaa 55606410  T
Q  346 ttgagatagatgaaaatcatatttttagtacatatttgatcataaattacataagttaactccttatcttgtttagaactccaagtctttctctagtaat 445  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||| | |||||||||||||| |||||||||||   |    
T  55606409 ttgatatagatgaaaattatatttttagtacatatttgatcataaattacataagttatttccttatatagtttagaactccaaatctttctctag---t 55606313  T
Q  446 ttaagttatctaagttact 464  Q
    ||||||||| |||||||||    
T  55606312 ttaagttatttaagttact 55606294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 172 - 442
Target Start/End: Original strand, 25967825 - 25968102
Alignment:
Q  172 cgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca-----agtgaacaaaaatcacaacaaaacgccgtta 266  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||     |||||||||||||||| || ||| |||||||    
T  25967825 cgagaataaggctgcgacaaaaaggtataggtagcggacgttaccgttttccaccgtttttacatacagagtgaacaaaaatcacgacgaaatgccgtta 25967924  T
Q  267 cagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatatttt--ttcaattgagatagatgaaaatca 364  Q
    || ||  || |||||||| ||||||||||||||||||||| || ||||||| | ||||||||| ||||||||||  ||||||||| |||||||| |||||    
T  25967925 caaccgcgacgaaacaccgttacggctgcaaaaaattgccattcatgacaacagacatagaattcggatattttttttcaattgatatagatgataatca 25968024  T
Q  365 tatttttagtacatatttgatcataaattacataagttaactccttatcttgtttagaactccaagtctttctctagt 442  Q
    ||||||| ||||||||||||| ||||||||||||||||| || ||||||| |||||||||  ||  ||||||||||||    
T  25968025 tatttttggtacatatttgataataaattacataagttatcttcttatctagtttagaacgtcagatctttctctagt 25968102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 148 - 441
Target Start/End: Complemental strand, 38412227 - 38411936
Alignment:
Q  148 aggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaaaa 246  Q
    |||||||||||||  ||  |||| |||||||||||| ||||||||||| |||||||||| || ||||||| ||    ||||||| ||| |||||||||||    
T  38412227 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaag-tataggtagccgacgttaccggtta---ccgttttcacagagtgaacaaaa 38412132  T
Q  247 atcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatattttttcaat 346  Q
    ||||  || |||||| |||||||||  || |||||||||||||||| |||||| | || |||| ||||||||| |||   |||| | |||| ||||||||    
T  38412131 atcaagacgaaacgctgttacagccgcgacgaaacaccattacggccgcaaaagaatgtcgttcatgacaatagacaccaaatctgaatatcttttcaat 38412032  T
Q  347 tgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa-gttaactccttatcttgtttagaactccaagtctttctctag 441  Q
    | |||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||  ||||||||| |||||||||||||| ||| |||||||    
T  38412031 taagatagatgaaaatcatatttttactacatacttgattataaattacataatgttatttccttatctagtttagaactccaaatctatctctag 38411936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 271 - 463
Target Start/End: Complemental strand, 13198317 - 13198129
Alignment:
Q  271 catgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttt 370  Q
    ||||| ||||||| ||||||| |  |||||| |||||||| | |||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  13198317 catgacgaaacacgattacgg-taaaaaaaaatgccgtttgtaacaaaagacatagaatccggatattttttcaattgagatacatgaaaatcatattct 13198219  T
Q  371 tagtacatatttgatcataaattacataagttaactccttatcttgtttagaactccaagtctttctctagtaatttaagttatctaagttac 463  Q
    |||| |||||||||||||||||||||||||||| ||||||||||  ||||||||||||| ||||| |||||   ||||||||||| |||||||    
T  13198218 tagtgcatatttgatcataaattacataagttatctccttatctaatttagaactccaaatctttgtctag---tttaagttatcaaagttac 13198129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 149 - 399
Target Start/End: Original strand, 11440396 - 11440648
Alignment:
Q  149 ggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctcc-gtttttaca-agtgaacaaaa 246  Q
    ||||||||||||| ||   |||||||||||||||||||| |||||||||||||||||  ||| ||| || |||| | | ||||||||| |||||||||||    
T  11440396 ggttttaaaaaacggtcttttatcgagaaaaaggccgcggcaaaaaggtataggtagtcgatattatcgattttttactgtttttacacagtgaacaaaa 11440495  T
Q  247 atcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatattttttcaat 346  Q
     | || || ||| ||| ||||||||  ||||||||||| ||||  |  ||||||| || | || ||||||||| ||| | | |||||||| |||||||||    
T  11440496 gttacgacgaaaagccattacagcctcgatgaaacaccgttacaaccacaaaaaaatgtcattcatgacaatagacacatagtccggataatttttcaat 11440595  T
Q  347 tgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa 399  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11440596 taagatagatgaaaatcatatttttagtacatatttgatcataaattacataa 11440648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 370 - 464
Target Start/End: Complemental strand, 46308491 - 46308399
Alignment:
Q  370 ttagtacatatttgatcataaattacataagttaactccttatcttgtttagaactccaagtctttctctagtaatttaagttatctaagttact 464  Q
    |||||||||||||||||||||||||||||||||| |||||||  | ||||||||||| || ||| |||||   |||||||||||| |||||||||    
T  46308491 ttagtacatatttgatcataaattacataagttatctccttagttagtttagaactctaaatctctctct--caatttaagttatttaagttact 46308399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 46308565 - 46308490
Alignment:
Q  262 cgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatatt 338  Q
    ||||||| |||||||||||||| |||||| |||||||||||||  ||| ||||||||| |||||||||| |||||||    
T  46308565 cgttacaaccatgatgaaacac-attacgactgcaaaaaattgttgttcatgacaatagacatagaatcgggatatt 46308490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 373
Target Start/End: Complemental strand, 30839812 - 30839651
Alignment:
Q  212 ttaccgtttttctccgtttttaca-agtgaacaaaaatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgttt 310  Q
    |||| |||||||  |||||||| | |||||||||||||||| |  |||| |||||||||||| || ||||  | |||| ||| |||||||| || ||       
T  30839812 ttactgtttttcatcgtttttatagagtgaacaaaaatcacgatgaaacaccgttacagccacgacgaaatgctattatggccgcaaaaaaatgtcggcc 30839713  T
Q  311 atgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttttag 373  Q
    |||  |||| | |||||||| | ||||||||| |||||||| |||| ||||||||||||||||    
T  30839712 atgttaatagatatagaatctgaatatttttt-aattgagacagataaaaatcatatttttag 30839651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 148 - 420
Target Start/End: Complemental strand, 32617930 - 32617658
Alignment:
Q  148 aggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaaaa 246  Q
    |||||||||||||| ||   ||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| | |||||||||||    
T  32617930 aggttttaaaaaacggtcggttaccgagaaaaaggccgccacaaaaaggtataggtagcggacgttaccgtttttcaccgtttttatagagtgaacaaaa 32617831  T
Q  247 atcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatattttttcaat 346  Q
    || || || |||||  |||||||||  || |||||||| |||||||  |||| || ||| ||| ||||||||| ||||||||||||| ||||||||||||    
T  32617830 attacgacgaaacgttgttacagccgcgacgaaacaccgttacggcc-caaagaaatgcagttcatgacaatagacatagaatccgggtattttttcaat 32617732  T
Q  347 tgagatagatgaaaatcatatttttagtacatatttgatcataaattacataagttaactccttatcttgttta 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  32617731 tgagatagatgaaaatcatatttttagtacatatttgatcataaattacataagttatctccttatctagttta 32617658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 149 - 372
Target Start/End: Original strand, 12990144 - 12990370
Alignment:
Q  149 ggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttct-ccgtttttaca-agtgaacaaaa 246  Q
    ||||||||||||| ||   ||| |||||||||||| |||| |||||||||||||||| ||| ||||||||||||   |||||||||   |||||||||||    
T  12990144 ggttttaaaaaacggttcgttaccgagaaaaaggctgcgataaaaaggtataggtagtggacgttaccgttttttgaccgtttttatggagtgaacaaaa 12990243  T
Q  247 atcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatatttttt-caa 345  Q
    |||||||| ||||  |||||||||   || |||| ||| |||| ||  |||||||||| |||||||||||||| |||||||||| ||||||||||| ||     
T  12990244 atcacaacgaaacatcgttacagctgcgacgaaataccgttacagccacaaaaaattgtcgtttatgacaatagacatagaatctggatattttttgcag 12990343  T
Q  346 ttgagatagatgaaaatcatattttta 372  Q
    ||||||| |||||||||||||||||||    
T  12990344 ttgagatcgatgaaaatcatattttta 12990370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 277 - 426
Target Start/End: Original strand, 9457554 - 9457704
Alignment:
Q  277 gaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatatttt-ttcaattgagatagatgaaaatcatatttttagta 375  Q
    ||||| || |||| || |||||||| ||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||  ||    
T  9457554 gaaacgccgttacagccgcaaaaaaatgccgttcatgacaatagacatagaatccagatatttttttcaattgagatagataaaaatcatatttttgata 9457653  T
Q  376 catatttgatcataaattacataagttaactccttatcttgtttagaactc 426  Q
    ||||| ||||||||||||||  |||||| ||||||| ||||||||||||||    
T  9457654 catatctgatcataaattactcaagttatctccttaccttgtttagaactc 9457704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 277 - 426
Target Start/End: Original strand, 9461651 - 9461801
Alignment:
Q  277 gaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatatttt-ttcaattgagatagatgaaaatcatatttttagta 375  Q
    ||||| || |||| || |||||||| ||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||  ||    
T  9461651 gaaacgccgttacagccgcaaaaaaatgccgttcatgacaatagacatagaatccagatatttttttcaattgagatagataaaaatcatatttttgata 9461750  T
Q  376 catatttgatcataaattacataagttaactccttatcttgtttagaactc 426  Q
    ||||| ||||||||||||||  |||||| ||||||| ||||||||||||||    
T  9461751 catatctgatcataaattactcaagttatctccttaccttgtttagaactc 9461801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 306 - 428
Target Start/End: Original strand, 34664745 - 34664867
Alignment:
Q  306 cgtttatgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa-gttaa 404  Q
    |||| ||||||||| ||||||||   ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||     
T  34664745 cgttcatgacaatagacatagaaattggatattgtttcaattgagatagatgaaaatcata-ttttagtacgtatttgatcataaattacataacgttat 34664843  T
Q  405 ctccttatcttgtttagaactcca 428  Q
    || ||||||| |||||||||||||    
T  34664844 cttcttatctagtttagaactcca 34664867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 236 - 385
Target Start/End: Complemental strand, 14081977 - 14081826
Alignment:
Q  236 agtgaacaaaaatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaa--taaacatagaatccgg 333  Q
    |||||| ||||||||| || |||||| ||||||| | |||||||||||| ||||||| ||||||||| ||||||  | |||   || |||||||||| ||    
T  14081977 agtgaataaaaatcacgacgaaacgctgttacagtcgtgatgaaacaccgttacggccgcaaaaaat-gccgttcgttacatattagacatagaatctgg 14081879  T
Q  334 atatttttt-caattgagatagatgaaaatcatatttttagtacatatttgat 385  Q
    | ||||||| |||||||||||||||||||||| |||||||||| |||||||||    
T  14081878 aaatttttttcaattgagatagatgaaaatcaaatttttagtatatatttgat 14081826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 366 - 464
Target Start/End: Original strand, 12990541 - 12990636
Alignment:
Q  366 atttttagtacatatttgatcataaattacataagttaactccttatcttgtttagaactccaagtctttctctagtaatttaagttatctaagttact 464  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||| |||||||||||   |||||||||| |||||||||    
T  12990541 atttttaatacatatttgatcataaattacataatttatctccttatctagtttagaacttcaaatctttctctag---tttaagttatttaagttact 12990636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 24699975 - 24699906
Alignment:
Q  330 ccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa 399  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||| |||||||||    
T  24699975 ccggatattttttcaattgagatagatgaaaattatatttttcgtatatatttgataatatattacataa 24699906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 172 - 271
Target Start/End: Original strand, 9457470 - 9457570
Alignment:
Q  172 cgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaaaaatcacaacaaaacgccgttacagc 270  Q
    |||| |||||||||||||||||||||||||| |||||| ||| ||||||||| |||   || || |||||||||||||||| || |||||||||||||||    
T  9457470 cgagtaaaaggccgcgacaaaaaggtataggcagcggacgttgccgtttttcaccgaaatttcagagtgaacaaaaatcacgacgaaacgccgttacagc 9457569  T
Q  271 c 271  Q
    |    
T  9457570 c 9457570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 172 - 271
Target Start/End: Original strand, 9461567 - 9461667
Alignment:
Q  172 cgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaaaaatcacaacaaaacgccgttacagc 270  Q
    |||| |||||||||||||||||||||||||| |||||| ||| ||||||||| |||   || || |||||||||||||||| || |||||||||||||||    
T  9461567 cgagtaaaaggccgcgacaaaaaggtataggcagcggacgttgccgtttttcaccgaaatttcagagtgaacaaaaatcacgacgaaacgccgttacagc 9461666  T
Q  271 c 271  Q
    |    
T  9461667 c 9461667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 35811729 - 35811835
Alignment:
Q  146 caaggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttacaagtgaacaaa 245  Q
    |||||||||||||||||||  ||||  |  |||  |||| | |||||||| ||||||||| ||  | |||||||||||||| |||| || ||||||||||    
T  35811729 caaggttttaaaaaacagtccattactgcaaaatcggccacaacaaaaagatataggtagtggccgataccgtttttctccattttaac-agtgaacaaa 35811827  T
Q  246 aatcacaa 253  Q
    ||||||||    
T  35811828 aatcacaa 35811835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 146 - 458
Target Start/End: Original strand, 19967310 - 19967616
Alignment:
Q  146 caaggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaa 244  Q
    |||||||||||||||||||  |||| ||||||||||||| || |||||||||| ||||||| || ||||||||||||| ||||||||||| |||||||||    
T  19967310 caaggttttaaaaaacagtccattaccgagaaaaaggccacggcaaaaaggtacaggtagccgaagttaccgtttttcaccgtttttacagagtgaacaa 19967409  T
Q  245 aaatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaat-tgccgtttatgacaataaacatagaatccggatattttttc 343  Q
    ||||| | |  |||||||||||||||||||| |||||||  ||||||| ||||||||  ||  ||| | ||||| | |||||||||||||||||||||||    
T  19967410 aaatctcgaggaaacgccgttacagccatgacgaaacactgttacggccgcaaaaaaaatgttgttcacgacaacagacatagaatccggatattttttc 19967509  T
Q  344 aattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataagttaactccttatcttgtttagaactccaagtctttctctagta 443  Q
    |||||||||| ||||||||||||||||||||||||     |||||||||||| |||||| ||||||| ||| |||||||||||||| ||||||| |||      
T  19967510 aattgagatatatgaaaatcatatttttagtacat-----atcataaattacctaagttgactccttgtctagtttagaactccaaatctttctttag-- 19967602  T
Q  444 atttaagttatctaa 458  Q
     ||||||||||||||    
T  19967603 -tttaagttatctaa 19967616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 174 - 442
Target Start/End: Original strand, 41283320 - 41283593
Alignment:
Q  174 agaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaaaaatcacaacaaaacgccgttacagcca 272  Q
    ||||||||| || |||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||  | ||| ||||||||| |||    
T  41283320 agaaaaaggtcgtgacaaaaaagtataggtagcggacgttaccgtttttcaccgtttttacagagtgaacaaaaatcacgtcgaaaagccgttacaacca 41283419  T
Q  273 tgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatatttt-----ttcaattgagatagatgaaaatcatat 367  Q
      | |||||| | ||||||| ||||||||||| || | ||||||||| ||||| ||||| ||||||||     |||||||||||||||||||||||  ||    
T  41283420 caacgaaacatcgttacggccgcaaaaaattgtcgctcatgacaatagacataaaatccagatattttttttcttcaattgagatagatgaaaatcccat 41283519  T
Q  368 ttttagtacatatttgatcataaattacataagttaactccttatcttgtttagaactccaagtctttctctagt 442  Q
    |||||||||| || ||||||||||||| |||||||| |||||||||| |||||||||| ||| ||||||||||||    
T  41283520 ttttagtacaaatctgatcataaatta-ataagttatctccttatctagtttagaacttcaaatctttctctagt 41283593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 168 - 390
Target Start/End: Original strand, 36491323 - 36491545
Alignment:
Q  168 ttatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaaaaatcacaacaaaacgccgtta 266  Q
    |||||| ||||||  ||| ||||| |||||||||||||| ||||||| |||||||  ||||||||| | ||||||||||||||||||| ||||| ||||     
T  36491323 ttatcgggaaaaattccgtgacaataaggtataggtagccgatgttatcgttttttaccgtttttatagagtgaacaaaaatcacaacgaaacgtcgttt 36491422  T
Q  267 cagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcata 366  Q
    || |   |||||||||||||| |||| |||| |||| | |||||||||||||   ||||||||  |||||||||||||||| ||||||||||||||||||    
T  36491423 caactgcgatgaaacaccattgcggccgcaagaaat-gtcgtttatgacaattgtcatagaatatggatattttttcaattaagatagatgaaaatcata 36491521  T
Q  367 tttttagtacatatttgatcataa 390  Q
    |||||||||||||||| |||||||    
T  36491522 tttttagtacatatttaatcataa 36491545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 311 - 440
Target Start/End: Complemental strand, 13424834 - 13424704
Alignment:
Q  311 atgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataagttaactcctt 410  Q
    |||||| || ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||    
T  13424834 atgacagtagacatagaatccggatattttttcaattgaaataaatgaaaataatatttttagtacatatttgatcataaatcacgtaagttatctcctt 13424735  T
Q  411 -atcttgtttagaactccaagtctttctcta 440  Q
     ||||  ||||||| || || ||||||||||    
T  13424734 aatctattttagaattctaaatctttctcta 13424704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 304 - 401
Target Start/End: Complemental strand, 16341621 - 16341520
Alignment:
Q  304 gccgtttatgacaataaacatagaatccggatatttttt--caattgagatagatgaaaatcatatttttagtacatatttgatc--ataaattacataa 399  Q
    |||||| ||||||||| ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||    
T  16341621 gccgttcatgacaatagacatagaatccggatattttttttcaattgagatagatgaaaaacatatttttagtacatatttgatcatataaattacataa 16341522  T
Q  400 gt 401  Q
    ||    
T  16341521 gt 16341520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 423
Target Start/End: Complemental strand, 39426288 - 39426174
Alignment:
Q  311 atgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatat-ttttagtacatatttgatcataaattacataa-gttaactcc 408  Q
    ||||||||| |||||||||||  |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| || | ||||    
T  39426288 atgacaatagacatagaatccaaatattttttcaattaagatagatgaaaatcatatattttagtacatatttgatcataaattacataatgtcatctcc 39426189  T
Q  409 ttatcttgtttagaa 423  Q
    |||| | ||||||||    
T  39426188 ttatatagtttagaa 39426174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 306 - 424
Target Start/End: Complemental strand, 22927269 - 22927149
Alignment:
Q  306 cgtttatgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttttagt--acatatttgatcataaattacataagtta 403  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||  ||| |||||||||||||| ||||| ||||    
T  22927269 cgttcatgacaatagacataaaatccggatattttttcaattgagatagatgaaaatcatattttttgtacacacatttgatcataaatcacatatgtta 22927170  T
Q  404 actccttatcttgtttagaac 424  Q
     ||| || ||| |||||||||    
T  22927169 tctcattgtctagtttagaac 22927149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 399
Target Start/End: Complemental strand, 20141814 - 20141659
Alignment:
Q  243 aaaaatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatatttttt 342  Q
    |||||||||||| |||| | ||||||| |  ||  |||||||| || | |||||| ||| || |||| ||||||||| ||| ||| ||| | |||||||     
T  20141814 aaaaatcacaacgaaacactgttacagtcgcgactaaacaccactatgtctgcaacaaaatgtcgttcatgacaatatacaaagattcctgttattttt- 20141716  T
Q  343 caattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa 399  Q
    ||||| |||| |||||||||||||| |||| |||| |||||| ||||||||||||||    
T  20141715 caatttagatggatgaaaatcatatctttattacagatttgaacataaattacataa 20141659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 145 - 297
Target Start/End: Complemental strand, 39426614 - 39426464
Alignment:
Q  145 gcaaggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttac-aagtgaaca 243  Q
    ||||||||||||||||||||   ||| ||||||||||||||| ||||||||||||  |||||  ||||| | ||||||  | |||||||| |||||||||    
T  39426614 gcaaggttttaaaaaacagtctgttaccgagaaaaaggccgcaacaaaaaggtattagtagccaatgttgctgttttttacagtttttacaaagtgaaca 39426515  T
Q  244 aaaatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaa 297  Q
    || |||   || ||| |||||||||||| |||  ||||||| ||||||| ||||    
T  39426514 aagatc---acgaaatgccgttacagccgtgacaaaacaccgttacggccgcaa 39426464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 13424958 - 13424880
Alignment:
Q  144 agcaaggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgttttt 222  Q
    ||||||||||||||| |  ||  |||| |||||||||| |||||| ||||||||||||||||| |||||||| ||||||    
T  13424958 agcaaggttttaaaatatggtccattaccgagaaaaagaccgcgaaaaaaaggtataggtagccgatgttactgttttt 13424880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 14355051 - 14355007
Alignment:
Q  338 tttttcaattgagatagatgaaaatcatatttttagtacatattt 382  Q
    ||||||||||||||| ||||||||||| ||||||| |||| ||||    
T  14355051 tttttcaattgagatggatgaaaatcacatttttaatacaaattt 14355007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 172 - 442
Target Start/End: Complemental strand, 25636241 - 25635970
Alignment:
Q  172 cgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaaaaatcacaacaaaacgccgttacagc 270  Q
    ||||||||||||||||||||||||||||||||||  |||| ||| ||||||| |||||| |||| |||||||||||||||| || ||| ||| | | |||    
T  25636241 cgagaaaaaggccgcgacaaaaaggtataggtagatgatgctactgtttttcaccgtttctacatagtgaacaaaaatcacgaccaaaagccataatagc 25636142  T
Q  271 catgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttt 370  Q
    |   | |||||||| ||||||| | ||||||| | |||| ||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||| ||    
T  25636141 cgcaacgaaacaccgttacggccgtaaaaaat-gtcgttcatgacaataaacacataatccgggtattttttcaattgaaatagatgaaaatcatatctt 25636043  T
Q  371 tagtacatatttgatcataaattacataa-gttaactccttatcttgtttagaactccaagtctttctctagt 442  Q
    |||||||||||| |||||||||||||||| |||| |||||| ||| |||||||||||||| ||| ||| ||||    
T  25636042 tagtacatatttaatcataaattacataatgttatctccttgtctagtttagaactccaaatctatctttagt 25635970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 277 - 462
Target Start/End: Complemental strand, 47363936 - 47363753
Alignment:
Q  277 gaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatattttttcaattgagat-agatgaaaatcatatttttagta 375  Q
    ||||||||  |||| | |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  47363936 gaaacaccgatacgaccgcaaaaaattgccgttcatgacaatagacatagaatccggatattttttcaattgagattagatgaaaagcatatttttagta 47363837  T
Q  376 catatttgatcataaattacataagttaactccttatcttgtttagaactccaagtctttctctagtaatttaagttatctaagtta 462  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||||||| ||| |||||||||||   |||||||||| |||||||    
T  47363836 catatttgatcatagattacataagttatctccttatctagtttagaacttcaaatctttctctag---tttaagttatttaagtta 47363753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 340 - 429
Target Start/End: Complemental strand, 39653626 - 39653536
Alignment:
Q  340 tttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa-gttaactccttatcttgtttagaactccaa 429  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| ||||||||||||||    
T  39653626 tttcaattgaaatagatgaacatcatatttttagtacatatttgatcataaattacataatgttatctctttatctagtttagaactccaa 39653536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 190 - 442
Target Start/End: Complemental strand, 10493730 - 10493476
Alignment:
Q  190 aaaaaggtataggtagcggatgttaccgt--ttttctccgtttttaca-agtgaacaaaaatcacaacaaaacgccgttacagccatgatgaaacaccat 286  Q
    |||||||||||| ||||  ||||||||||  ||||| | |||| |||  ||||| |||||||||| |||||||| | | ||||||  ||  ||||||| |    
T  10493730 aaaaaggtatagctagcctatgttaccgtgtttttcactgtttgtacggagtgaccaaaaatcacgacaaaacgtcctaacagccgcgacaaaacaccgt 10493631  T
Q  287 tacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatc 386  Q
    || ||| ||| ||||| ||| || || |||||| ||| | |||  | ||||||||||||||||||| ||||||| ||||||||||| | |||||||||||    
T  10493630 taaggccgcataaaat-gccattcataacaatagacacataatatgtatattttttcaattgagatggatgaaa-tcatatttttaatgcatatttgatc 10493533  T
Q  387 ataaattacataa-gttaactccttatcttgtttagaactccaagtctttctctagt 442  Q
    ||||||||||||| |||| |||||||| | ||||||| |||||| ||  ||||||||    
T  10493532 ataaattacataatgttatctccttatatagtttagacctccaaatccatctctagt 10493476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 425
Target Start/End: Original strand, 45435368 - 45435478
Alignment:
Q  315 caataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa-gttaactccttatc 413  Q
    ||||||||| ||||||  ||||||||||||||||||||| || ||  |  | ||||||||||||||||||||||||||||||||| |||| ||| |||||    
T  45435368 caataaacacagaatctagatattttttcaattgagatatat-aattttttttttttagtacatatttgatcataaattacataatgttatctctttatc 45435466  T
Q  414 ttgtttagaact 425  Q
    | ||||||||||    
T  45435467 tagtttagaact 45435478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 396
Target Start/End: Original strand, 33049114 - 33049172
Alignment:
Q  338 tttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattaca 396  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  33049114 tttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattaca 33049172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 396
Target Start/End: Original strand, 31742876 - 31742934
Alignment:
Q  338 tttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattaca 396  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||| |||| ||||||    
T  31742876 tttttcaattgagatggatgaaaatcacatttttaatacatatttgaacatatattaca 31742934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 47364036 - 47363960
Alignment:
Q  145 gcaaggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgttttt 222  Q
    ||||| ||||||||||| ||   ||| ||||||||||||| | |||||||| ||||||||||||| ||||||||||||    
T  47364036 gcaagattttaaaaaacggtccgttaccgagaaaaaggccaccacaaaaag-tataggtagcggacgttaccgttttt 47363960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 296 - 442
Target Start/End: Complemental strand, 23490182 - 23490036
Alignment:
Q  296 aaaaaattgccgtttatgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattac 395  Q
    |||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23490182 aaaaaaatgccgttcatgacaatagacatagcatccggatattttttcaattgagatagatgaaaatcatatttttcgtacatatttgatcataaattac 23490083  T
Q  396 ataagttaactccttatcttgtttagaactccaagtctttctctagt 442  Q
    |||||||| |||||||||| |||||||||||||| ||||||||||||    
T  23490082 ataagttatctccttatctagtttagaactccaaatctttctctagt 23490036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 23490286 - 23490207
Alignment:
Q  173 gagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaaaaatcac 251  Q
    |||||||||||||||||||||||||||||||||| || |||||| |||||| || |||||||| ||||||||||||||||    
T  23490286 gagaaaaaggccgcgacaaaaaggtataggtagccgaagttaccatttttcaccatttttacagagtgaacaaaaatcac 23490207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 313 - 399
Target Start/End: Complemental strand, 7154465 - 7154379
Alignment:
Q  313 gacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa 399  Q
    ||||||||||| | ||||| ||| |||||| |||  |||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  7154465 gacaataaacacataatcctgatgttttttaaatgaagatagatgaaaatcatatttttaatacatatttgatcatatattacataa 7154379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 14867424 - 14867365
Alignment:
Q  338 tttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacat 397  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  14867424 tttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattacat 14867365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 41476313 - 41476367
Alignment:
Q  5 gagtgagatgaaaggttctggtttgtgtccaaacaaggattcctttcttataatt 59  Q
    |||| |||||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  41476313 gagtaagatgaaaggttctggtttgggtccaaataaggattcatttcttataatt 41476367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 10473968 - 10473867
Alignment:
Q  173 gagaaaaaggccgcgacaaaaa---ggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaaaaatcacaacaaaacgccgttaca 268  Q
    ||||||||||||| ||||||||   |||||||||||| ||  |||| ||||||| | ||||||||| |||||||||||||||| || ||||| | |||||    
T  10473968 gagaaaaaggccgtgacaaaaaggtggtataggtagccgacattactgtttttcactgtttttacagagtgaacaaaaatcacgacgaaacgacattaca 10473869  T
Q  269 gc 270  Q
    ||    
T  10473868 gc 10473867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 383
Target Start/End: Complemental strand, 45191814 - 45191664
Alignment:
Q  237 gtgaacaaaaatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggata 336  Q
    ||||||||||||||| || ||||| | |||||| |  || |||||||| ||||||| || ||||| || |||| ||||||||  ||| | ||| | ||||    
T  45191814 gtgaacaaaaatcacgacgaaacgtcattacagtcgcgacgaaacaccgttacggccgccaaaaa-tgtcgttcatgacaatggacacaaaattcagata 45191716  T
Q  337 tttt-----ttcaattgagatagatgaaaatcatatttttagtacatatttg 383  Q
    ||||     |||||| ||||||| ||||||||||| ||||||||||||||||    
T  45191715 ttttttttcttcaatagagataggtgaaaatcatacttttagtacatatttg 45191664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 773692 - 773752
Alignment:
Q  192 aaaggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaaaaatcac 251  Q
    |||||||||||| | ||||| ||||||||||||| ||||| ||| ||||||||||||||||    
T  773692 aaaggtataggtggtggatgataccgtttttctctgttttaacagagtgaacaaaaatcac 773752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 14867620 - 14867560
Alignment:
Q  146 caaggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagc 206  Q
    |||||||||||||||| ||   |||  |||||||||||||||||| |||| ||||||||||    
T  14867620 caaggttttaaaaaacggtccgttactgagaaaaaggccgcgacagaaagatataggtagc 14867560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 277 - 464
Target Start/End: Complemental strand, 37794884 - 37794699
Alignment:
Q  277 gaaacaccattacggctgcaaaaaat-tgccgtttatgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttttagta 375  Q
    |||||||| ||||||||||||||||  || |||| ||||||| | |||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  37794884 gaaacaccgttacggctgcaaaaaaaatgtcgttcatgacaaaagacatagaatctggatattttttcaattgagatagaagaaaatcatatttttagta 37794785  T
Q  376 catatttgatcataaattacataagttaactccttatcttgtttagaactccaagtctttctctagtaatttaagttatctaagttact 464  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| |   | ||||||||||||||||||    
T  37794784 catatttgatcataaattacataagttatctccttatctagtttagaactccaaatctttctctgg---tctaagttatctaagttact 37794699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 145 - 435
Target Start/End: Complemental strand, 35016753 - 35016455
Alignment:
Q  145 gcaaggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca--------a 236  Q
    ||||||||||||||||| ||   |||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||| | ||||||| |        |    
T  35016753 gcaaggttttaaaaaaccgtccgttatcgagaaaatggccgcgacaaaaaggtataggtagcgaatgttgccgttcttcactgtttttatagattataga 35016654  T
Q  237 gtgaacaaaaatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggata 336  Q
    ||||||||    ||| ||||||  || |||||||  ||| ||||||||||||| |||||||||||||||| ||  |||||||| ||||||||| |||||     
T  35016653 gtgaacaa----cacgacaaaataccattacagctgtgacgaaacaccattacagctgcaaaaaattgccattcttgacaatagacatagaattcggatt 35016558  T
Q  337 tttttt----caattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataagttaactccttatcttgtttagaactccaagtc 432  Q
    ||||||    | |||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||| |||||||||| |||||||| ||||| ||    
T  35016557 tttttttttccgattgagatagatgaaaatcatatttttgatacatatttgatcataaattatataagttatctccttatctagtttagaattccaaatc 35016458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 277 - 464
Target Start/End: Complemental strand, 17989221 - 17989035
Alignment:
Q  277 gaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatatttttt--caattgagatagatgaaaatcatatttttagt 374  Q
    |||||||| ||||||| ||||||||  |||||| |||| |||| |||||||||| |||| ||||||  |||||||||| |||||||||||||||||||||    
T  17989221 gaaacaccgttacggccgcaaaaaacagccgttcatgataatagacatagaatctggattttttttttcaattgagatcgatgaaaatcatatttttagt 17989122  T
Q  375 acatatttgatcataaattacataagttaactccttatcttgtttagaactccaagtctttctctagtaatttaagttatctaagttact 464  Q
    |||||||||||||||||||| |||| ||| |||||||||| |||||||||||||| ||||| |||||   |||||||||| |||||||||    
T  17989121 acatatttgatcataaattatataatttatctccttatctagtttagaactccaaatctttttctag---tttaagttatttaagttact 17989035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 228 - 392
Target Start/End: Original strand, 19263659 - 19263824
Alignment:
Q  228 tttttacaa-gtgaacaaaaatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatag 326  Q
    ||||||||| ||||||||||||||  || ||||| | ||| |||||  || ||||||| ||||||| |||||||| || |||| ||||||||| | ||||    
T  19263659 tttttacaatgtgaacaaaaatcatgacgaaacgtcattatagccacaattaaacaccgttacggccgcaaaaaactgtcgttcatgacaatagatatag 19263758  T
Q  327 aatccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaat 392  Q
    ||||  |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19263759 aatcaagatattgtttcaattgagatagatgaaaatcatatttttaatacatatttgatcataaat 19263824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 225 - 399
Target Start/End: Original strand, 5428526 - 5428700
Alignment:
Q  225 ccgtttttaca-agtgaacaaaaatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaaca 323  Q
    ||||||||||| |||||||||||||||| || |||| ||||||||   |||| |||| || |||||| |  ||||||||  |  || ||||||||| |||    
T  5428526 ccgtttttacagagtgaacaaaaatcacgacgaaacaccgttacaattatgacgaaatactattacgcccacaaaaaata-caattcatgacaatagaca 5428624  T
Q  324 tagaatccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa 399  Q
     | |||  ||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  5428625 caaaatttggatattatttcaattgagatagatgaaaatcatattattagtacataattgatcataaattacataa 5428700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 17989333 - 17989225
Alignment:
Q  144 agcaaggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttac-aagtgaac 242  Q
    |||||||||||||||||  ||   ||| | || |||||||| | |||||||||||||||||||| |  |||||||||||| |||||||||| ||||||||    
T  17989333 agcaaggttttaaaaaatggtccgttaccaaggaaaaggccacaacaaaaaggtataggtagcgaacattaccgtttttcaccgtttttactaagtgaac 17989234  T
Q  243 aaaaatcac 251  Q
    |||||||||    
T  17989233 aaaaatcac 17989225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 20929783 - 20929845
Alignment:
Q  147 aaggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcgga 209  Q
    ||||||||||||||||||   ||| | ||||||||| |||| |||||||||||||||||||||    
T  20929783 aaggttttaaaaaacagtccgttaccaagaaaaaggtcgcgccaaaaaggtataggtagcgga 20929845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 31806222 - 31806161
Alignment:
Q  227 gtttttacaagtgaacaaaaatcacaacaaaacgccgttacagccatgatgaaacaccatta 288  Q
    ||||||||||  | |||||||||||  | |||| ||||||||||| ||||||||||||||||    
T  31806222 gtttttacaaagggacaaaaatcacgtcgaaacaccgttacagccgtgatgaaacaccatta 31806161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 148 - 423
Target Start/End: Original strand, 7298926 - 7299192
Alignment:
Q  148 aggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttacaa-gtgaacaaaa 246  Q
    |||||||||||||| ||   ||| |||||||||||||||||||||||| ||| |||||| || ||||||| ||||          |||| ||||||||||    
T  7298926 aggttttaaaaaacggtccgttaccgagaaaaaggccgcgacaaaaag-tatcggtagccgacgttaccgctttt----------acaaagtgaacaaaa 7299014  T
Q  247 atcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatattttttcaat 346  Q
    |||||||| ||||| |||||||||   || |||| ||| ||||||| ||||||||| |||||| |||||| || | | | ||||||||||||||||||||    
T  7299015 atcacaacgaaacggcgttacagctgcgacgaaagacctttacggccgcaaaaaat-gccgttcatgacactagagacaaaatccggatattttttcaat 7299113  T
Q  347 tgagata-gatgaaaatcatatttttagtacatatttgatcataaattacataa-gttaactccttatcttgtttagaa 423  Q
    ||||||| |||||||| |||||||| ||||||||||| |||||||||||||||| |||| ||||||||||  |||||||    
T  7299114 tgagatacgatgaaaaccatattttaagtacatatttaatcataaattacataatgttatctccttatctactttagaa 7299192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 256 - 439
Target Start/End: Complemental strand, 11783659 - 11783476
Alignment:
Q  256 aaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccggatatttttt-caattgagatag 354  Q
    |||| ||||||||||   || |||||||  ||||||| |||||||  |||| || ||| ||||| | ||||| |||||||||||||| ||||||||||||    
T  11783659 aaactccgttacagctgcgacgaaacactgttacggccgcaaaaa--tgcctttcatggcaatagaaatagactccggatatttttttcaattgagatag 11783562  T
Q  355 atgaaaatcatatttttagtacatatttgatcataaattacataa-gttaactccttatcttgtttagaactccaagtctttctct 439  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||  |||||| ||| |||||||||||||| ||| |||||    
T  11783561 atgaaaatcatatttttagtacatatttgatcataaattacacaatgttgtctccttgtctagtttagaactccaaatctatctct 11783476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 308 - 399
Target Start/End: Complemental strand, 19596639 - 19596549
Alignment:
Q  308 tttatgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa 399  Q
    |||||||||||||||  ||||||||| ||||||| |||||||| | ||| |||||||||||||||||||| |||||| ||||| ||||||||    
T  19596639 tttatgacaataaactgagaatccggttattttt-caattgaggtggataaaaatcatatttttagtacaaatttgaacataagttacataa 19596549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 21926593 - 21926545
Alignment:
Q  351 atagatgaaaatcatatttttagtacatatttgatcataaattacataa 399  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21926593 atagatgaaaatcatattttcagtacatatttaatcataaattacataa 21926545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 50263069 - 50263002
Alignment:
Q  185 gcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttac-aagtgaacaaaaatcac 251  Q
    |||||| |||||||||||| | ||||| ||||||||||||| ||||| ||  ||||||||||||||||    
T  50263069 gcgacataaaggtataggtggtggatgataccgtttttctctgttttaacggagtgaacaaaaatcac 50263002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 46475579 - 46475623
Alignment:
Q  338 tttttcaattgagatagatgaaaatcatatttttagtacatattt 382  Q
    |||||||||||| || ||||||||||| |||||||||||| ||||    
T  46475579 tttttcaattgatatggatgaaaatcacatttttagtacaaattt 46475623  T

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Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 225 - 399
Target Start/End: Original strand, 32296249 - 32296423
Alignment:
Q  225 ccgtttttaca-agtgaacaaaaatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaaca 323  Q
    ||||||||||| |||||||||||||||| |  |||| ||||||  ||| ||| ||||||   |||||||  |||||||| || ||| ||||||||| |||    
T  32296249 ccgtttttacagagtgaacaaaaatcacgatgaaacaccgttatcgccgtgacgaaacattgttacggccacaaaaaat-gcggttcatgacaatagaca 32296347  T
Q  324 tagaatccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa 399  Q
     | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32296348 caaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacataa 32296423  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 297 - 429
Target Start/End: Original strand, 10117121 - 10117257
Alignment:
Q  297 aaaaattgccgtttatgacaataaacatagaatccggatattttttcaattgagatagatgaa-----aatcatatttttagtacatatttgatcataaa 391  Q
    ||||| || |||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||    
T  10117121 aaaaaatgtcgttcatgacaatagacacagaatccggatatttttccaattgagatagatgaattgaaaatcatatttttagtacatatttgatcataaa 10117220  T
Q  392 ttacataagttaactccttatcttgtttagaactccaa 429  Q
    |||||||| | | |||||||||| ||||||||||||||    
T  10117221 ttacataa-taatctccttatctagtttagaactccaa 10117257  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 146 - 332
Target Start/End: Complemental strand, 8169312 - 8169126
Alignment:
Q  146 caaggttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttttaca-agtgaacaa 244  Q
    |||||||||||||||| |    ||| ||||||||||| | |||||||| |||||||||||  || ||||||||||||| |  |||||||| |||||||||    
T  8169312 caaggttttaaaaaactgcccgttaccgagaaaaaggtcacgacaaaa-ggtataggtagtcgacgttaccgtttttcactatttttacagagtgaacaa 8169214  T
Q  245 aaatcacaacaaaacgccgttacagccatgatgaaacaccattacggctgcaaaaaattgccgtttatgacaataaacatagaatccg 332  Q
    ||||||| || ||||| ||||||||||  || |||||||| |||||||  ||||||| ||||||| ||||||||| ||||||||||||    
T  8169213 aaatcacgacgaaacgtcgttacagccgcgacgaaacaccgttacggccacaaaaaaatgccgttcatgacaatagacatagaatccg 8169126  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 9177570 - 9177633
Alignment:
Q  321 acatagaatccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttga 384  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9177570 acatagaatccgaatattttttcaattgagattgatgaaaatcatatttttagtacatatttga 9177633  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 397
Target Start/End: Original strand, 22509045 - 22509138
Alignment:
Q  303 tgccgtttatgacaataaacatagaatccggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacat 397  Q
    ||||||| ||||||||  ||| ||||||| ||||||||  ||||| |||| ||||||||||| ||||||||||||| ||||| ||||||||||||    
T  22509045 tgccgttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 22509138  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 8546250 - 8546295
Alignment:
Q  354 gatgaaaatcatatttttagtacatatttgatcataaattacataa 399  Q
    ||||||||||| |||| ||||||| |||||| ||||||||||||||    
T  8546250 gatgaaaatcacatttctagtacaaatttgaacataaattacataa 8546295  T

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Target: scaffold0989 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 2165 - 2084
Alignment:
Q  150 gttttaaaaaacagtaaattatcgagaaaaaggccgcgacaaaaaggtataggtagcggatgttaccgtttttctccgtttt 231  Q
    |||||||||||| ||   ||| |||||||||||||||||||||||| ||  | ||||||| ||||||||||||  |||||||    
T  2165 gttttaaaaaacggtctgttaccgagaaaaaggccgcgacaaaaagttaatgatagcggacgttaccgttttttaccgtttt 2084  T

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