View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10743_4 (Length: 413)
Name: NF10743_4
Description: NF10743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10743_4 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 33634660 - 33634263
Alignment:
| Q |
16 |
atagtagaaaattgaggcgtgttaagattgtgttgttttggtgtgttttgtatttgtagcaaatttattaggtggatctcaaagtgtgtttattttctag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33634660 |
atagtagaaaattgaggcgtgttaagattgtgttgttttggtgtgttttgtatttgtagcaaatttattaggtggatctcaaagtgtgtttattttctag |
33634561 |
T |
|
| Q |
116 |
cttattttgattaatccctatttctcatgtcacttccttttctttctttcaatctgaaggagtccaaattattttaaggttagttgagattattaataag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33634560 |
cttattttgattaatccctatttctcatgtcacttccttttctttctttgaatctgaaggagtccaaattattttaaggttagttgagattattaataag |
33634461 |
T |
|
| Q |
216 |
tatgtattggacactttgttgggttctcaactgtttaatataatgaagaaaataatggtttgcccttcaattttttattccaccacattaattgcttttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33634460 |
tatgtattggacactttgttgggttctcaactgtttaatataatgaagaaaataatggtttgcccttcaattttatattccaccacattaattgcttttc |
33634361 |
T |
|
| Q |
316 |
tatatcatccatctactgcatatttatagcgcctggtccatttatatctctagcggcatgtgtacatgattgagagaatgatgtagaactatggaaga |
413 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33634360 |
tatatcatccatccactgcatatttatagcgcctggtccatttatatctctagcggcatgtgtacatgattgagagaatgatgtagaactatggaaga |
33634263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University