View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10743_6 (Length: 371)
Name: NF10743_6
Description: NF10743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10743_6 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 159 - 359
Target Start/End: Original strand, 39022577 - 39022780
Alignment:
| Q |
159 |
ttattactaagttttagaattattattccttnnnnnnngttttaaaattcttattattaccctaatcatccgtctcaaatcataaatcgattaaataatt |
258 |
Q |
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| T |
39022577 |
ttattactaagttttagaattattattccttaaaaaaagttttacaattattattattaccctaatcatccgtctcaaatcataaatcgattaaataatt |
39022676 |
T |
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| Q |
259 |
tcatataaatt---nnnnnnnnnnnnttgtattggaatgaaaaactatgagttattttgaatggagaaaatattttgtatgttcattgatttggtattaa |
355 |
Q |
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| T |
39022677 |
tcatataaattaaaaaaaataaaaaattgtattggaatgaaaaactatgagttattttgaatggagaaaatattttgtatgttcattgatttggtattaa |
39022776 |
T |
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| Q |
356 |
tttt |
359 |
Q |
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|||| |
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| T |
39022777 |
tttt |
39022780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 39022442 - 39022585
Alignment:
| Q |
1 |
gtgtatgagtggatgcagaagaatctgcatagcgtaagtgttggggcatgcaaggacagctagtggtgaatattttaattttccannnnnnnggctttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39022442 |
gtgtatgagtggatgcagaagaatctgcatagcgtaagtgttggggcatgcaaggacagctagtggtgaatattttaattttccatttttttagctttgt |
39022541 |
T |
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| Q |
101 |
ttactgtttactaagctttagatcgtggtgagtaattaatacta |
144 |
Q |
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| T |
39022542 |
ttactgtttactaagctttagatcgtggtgagtaattattacta |
39022585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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