View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10743_low_1 (Length: 340)
Name: NF10743_low_1
Description: NF10743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10743_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 82 - 321
Target Start/End: Complemental strand, 55477178 - 55476939
Alignment:
| Q |
82 |
tcagctgaacttaacatcaatatatggcctttctctcggagtaggtcttctggaaactcagttagcagacccaagtcctccaccggagctccggttaccc |
181 |
Q |
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| T |
55477178 |
tcagctgaacttaacatcaatatatggcctttctctcggagtagatcttctggaaactcagttagcagacccaagtcctccaccggagctccggttaccc |
55477079 |
T |
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| Q |
182 |
ggaaagtaaacagtgcgccttgctcgaggagcaactctgccggagactcaaagtcaaggaagttgccaagtagtcctgctcgggtgggggtccatttggg |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55477078 |
ggaaagtaaacagtgcgccttgctcgaggagcaactctgccggagactcaaagtcaaggaagttgccaagtagtcctgctcgggtgggggtccatttggg |
55476979 |
T |
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| Q |
282 |
aaggagcagcccagtttggcaggttcgccatgccgctaag |
321 |
Q |
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| T |
55476978 |
aaggagcagcccagtttggcaggttcgccatgccgctaag |
55476939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 8845411 - 8845303
Alignment:
| Q |
149 |
gacccaagtcctccaccggagctccggttacccggaaagtaaacagtgcgccttgctcgaggagcaactctgccggagactcaaagtcaaggaagttgcc |
248 |
Q |
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||||||| | || ||||||||||||||| ||||||||||| |||||||| ||||| || | |||||||| |||||||| |||||||| || || | ||| |
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| T |
8845411 |
gacccaaattcttcaccggagctccggtgacccggaaagttaacagtgcaccttgttctcgtagcaactccgccggagaatcaaagtcgagaaaatggcc |
8845312 |
T |
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| Q |
249 |
aagtagtcc |
257 |
Q |
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| T |
8845311 |
aagtagtcc |
8845303 |
T |
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