View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10744_11 (Length: 318)
Name: NF10744_11
Description: NF10744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10744_11 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 2 - 311
Target Start/End: Complemental strand, 31263485 - 31263176
Alignment:
| Q |
2 |
aaatcccacaaactagataaacatattaaatataacataacttaatacaactccacatcagctactcactttcactcgaaacatacaacattggttcagt |
101 |
Q |
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| T |
31263485 |
aaatcccacaaactagataaacatattaaatataacataacttaatacaactccacatcagctactcactttcactcgaaacatacaacattggttcagt |
31263386 |
T |
|
| Q |
102 |
ttcttctcctgatctccaactaaacatttcttcaacatcatgatatttatgaaaaaccctaacaacataacttgttttctagttatcgttatcatcaacc |
201 |
Q |
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| T |
31263385 |
ttcttctcctgatctccaactaaacatttcttcaacatcatgatatttatgaaaaaccctaacaacataacttgttttctagttatcgttatcatcaacc |
31263286 |
T |
|
| Q |
202 |
aaagagatgtaaggaaagacatgcaatatcaatgatccttcaagtgtcagcacgagctaaatagaaaaattagtttagttattgttttaactataataaa |
301 |
Q |
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| T |
31263285 |
aaagagatgtaaggaaagacatgcaatatcaatgatccttcaagtgtcagcacgagctaaatagaaaaagtagtttagttattgttttaactataataaa |
31263186 |
T |
|
| Q |
302 |
atattcttcg |
311 |
Q |
| |
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|||| ||||| |
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| T |
31263185 |
atatccttcg |
31263176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 15853997 - 15854212
Alignment:
| Q |
6 |
cccacaaactag-ataaacatattaaatataacataacttaatacaactccacatcagctactcactttcactcgaaacat---acaacattggttcagt |
101 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| |||| ||||||| | |||||| |
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| T |
15853997 |
cccacaaactaggataaacatattaaatataacataactaaatataactccatatcagctactcactttcactcgatacatacaacaacatcgattcagt |
15854096 |
T |
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| Q |
102 |
ttcttctcctgatctccaactaaacatttcttcaacatcatgatatttatgaaaaaccctaacaacataacttgttttctagttatcgttatcatcaacc |
201 |
Q |
| |
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|||||||| ||||||||||| ||| ||||||||||||||| ||| |||| || | ||||| | | ||| ||||||||| |||||||| ||||||||| |
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| T |
15854097 |
ttcttctcttgatctccaacgaaatatttcttcaacatcaagatctttacaaagagccctaggatcttaatttgttttcttgttatcgtcatcatcaaca |
15854196 |
T |
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| Q |
202 |
aaagagatgtaaggaa |
217 |
Q |
| |
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| ||| |||||||||| |
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| T |
15854197 |
atagacatgtaaggaa |
15854212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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