View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10744_12 (Length: 316)

Name: NF10744_12
Description: NF10744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10744_12
NF10744_12
[»] chr2 (4 HSPs)
chr2 (1-304)||(32827278-32827581)
chr2 (180-287)||(29823453-29823559)
chr2 (187-224)||(9605144-9605181)
chr2 (183-260)||(33502909-33502986)
[»] chr8 (3 HSPs)
chr8 (181-258)||(1836275-1836351)
chr8 (183-261)||(5997342-5997420)
chr8 (183-260)||(34957146-34957222)
[»] chr4 (3 HSPs)
chr4 (183-288)||(29903961-29904065)
chr4 (183-237)||(41058874-41058928)
chr4 (183-288)||(33560604-33560708)
[»] scaffold0168 (1 HSPs)
scaffold0168 (183-274)||(31774-31863)
[»] chr3 (1 HSPs)
chr3 (204-253)||(43244435-43244484)
[»] chr7 (3 HSPs)
chr7 (183-255)||(45369110-45369182)
chr7 (187-260)||(7087352-7087425)
chr7 (183-223)||(13381965-13382005)
[»] chr5 (1 HSPs)
chr5 (185-251)||(10898672-10898738)
[»] chr1 (1 HSPs)
chr1 (183-260)||(47321967-47322043)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 32827278 - 32827581
Alignment:
Q  1 atttttatgccataaccaggaagattgagatgtatgtgatcagcacaaattctacctctttaacaaacaacaattaccagagcaagactcttactaccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32827278 atttttatgccataaccaggaagattgagatgtatgtgatcagcacaaattctacctctttaacaaacaacaattaccagagcaagactcttactaccaa 32827377  T
Q  101 acagacacggagcatttgtgtattcagtgtgtgtttgatttcatgcaagagagactccaaagtgattttatacacatataactgattttgacatgtttgg 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32827378 acagacacggagcattagtgtattcagtgtgtgtttgatttcatgcaagagagactccaaagtgattttatacacatataattgattttgacatgtttgg 32827477  T
Q  201 atgatgtcgattgaaattgattttgcttctaaaattggttataacttgaagctaggatttttaagcttttgattccaaacgtgattttcataatcaaata 300  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32827478 atgatgtcaattgaaattgattttgcttctaaaattggttataacttgaagctaggatttttaagcttttgattccaaacgtgattttcataatcaaata 32827577  T
Q  301 tatt 304  Q
    ||||    
T  32827578 tatt 32827581  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 287
Target Start/End: Original strand, 29823453 - 29823559
Alignment:
Q  180 aactgattttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattggttataacttgaagctaggatttttaagcttttgattccaaa 279  Q
    ||||||||| ||||||||||  |||||| |||||||||||||||||| |||||||||| ||  |||||||| ||| ||||| | |||||||||  |||||    
T  29823453 aactgatttagacatgtttgagtgatgttgattgaaattgattttgcctctaaaattgattcaaacttgaatctaagatttgt-agcttttgaccccaaa 29823551  T
Q  280 cgtgattt 287  Q
     |||||||    
T  29823552 tgtgattt 29823559  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 9605144 - 9605181
Alignment:
Q  187 tttgacatgtttggatgatgtcgattgaaattgatttt 224  Q
    |||||||||||||||||||||| |||||||||||||||    
T  9605144 tttgacatgtttggatgatgtcaattgaaattgatttt 9605181  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 33502986 - 33502909
Alignment:
Q  183 tgattttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattggttataacttgaagctaggattt 260  Q
    |||||||||||||||||| || | |||| | ||| ||||||||| || | ||||| || |||||||||||||| ||||    
T  33502986 tgattttgacatgtttggttgctctcgagtaaaactgattttgcatccagaattgattctaacttgaagctagaattt 33502909  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 1836351 - 1836275
Alignment:
Q  181 actgattttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattggttataacttgaagctaggat 258  Q
    |||||||| ||||||||||  |||||| || ||||| ||||||||| |||||||||| || |||||||||||||||||    
T  1836351 actgatttagacatgtttgagtgatgt-gactgaaactgattttgcctctaaaattgattctaacttgaagctaggat 1836275  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 5997420 - 5997342
Alignment:
Q  183 tgattttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattggttataacttgaagctaggatttt 261  Q
    ||||||||||||||||||||| | | || | ||||||||||||| ||||||| || || |||||||||| ||| |||||    
T  5997420 tgattttgacatgtttggatgtttttgagtaaaattgattttgcctctaaaagtgattctaacttgaagttagaatttt 5997342  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 34957222 - 34957146
Alignment:
Q  183 tgattttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattggttataacttgaagctaggattt 260  Q
    ||||||||||||||||||||||| |  |||| |||||| ||||| ||| |||||| || |||||| |||||| |||||    
T  34957222 tgattttgacatgtttggatgatattaattgcaattgactttgcatct-aaattgattctaacttaaagctaagattt 34957146  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 288
Target Start/End: Original strand, 29903961 - 29904065
Alignment:
Q  183 tgattttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattggttataacttgaagctaggatttttaagcttttgattccaaacgt 282  Q
    ||||||| |||||||||| ||||| | |||| |||||||||||  |||||||||| || |||||||||||||  |||||  | ||||||| |||||| ||    
T  29903961 tgattttcacatgtttgggtgatgccaattggaattgattttgactctaaaattgattctaacttgaagcta-tattttgtaacttttgactccaaaagt 29904059  T
Q  283 gatttt 288  Q
    ||||||    
T  29904060 gatttt 29904065  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 41058874 - 41058928
Alignment:
Q  183 tgattttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattg 237  Q
    ||||| ||||||||||||||| | |||| | |||||||||||||||| |||||||    
T  41058874 tgattgtgacatgtttggatgttttcgagtaaaattgattttgcttccaaaattg 41058928  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 288
Target Start/End: Complemental strand, 33560708 - 33560604
Alignment:
Q  183 tgattttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattggttataacttgaagctaggatttttaagcttttgattccaaacgt 282  Q
    |||||||||||||||||| || | |||| |  |||||||||||| |||| ||||| || ||||   |||||||||||| | ||||||||| || ||| ||    
T  33560708 tgattttgacatgtttggttgctctcgagtagaattgattttgcctctagaattgattctaaccgaaagctaggatttgt-agcttttgagtctaaaagt 33560610  T
Q  283 gatttt 288  Q
    ||||||    
T  33560609 gatttt 33560604  T

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Target: scaffold0168 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 31774 - 31863
Alignment:
Q  183 tgattttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattggttataacttgaagctaggatttttaagcttttgatt 274  Q
    ||||| |||||||||||| || |||||| | ||||||||| ||| || ||||||| |||| ||||||||||||||||| | |||||||||||    
T  31774 tgattctgacatgtttggttgttgtcgagtaaaattgattctgcctccaaaattgattat-acttgaagctaggatttgt-agcttttgatt 31863  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 43244484 - 43244435
Alignment:
Q  204 atgtcgattgaaattgattttgcttctaaaattggttataacttgaagct 253  Q
    ||||| ||||||||||||||||| |||||||||| || ||||||||||||    
T  43244484 atgtcaattgaaattgattttgcctctaaaattgattttaacttgaagct 43244435  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 45369110 - 45369182
Alignment:
Q  183 tgattttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattggttataacttgaagctag 255  Q
    ||||||||| ||||||||||| | || | |  ||||||||||||||||| ||||| || ||||||||||||||    
T  45369110 tgattttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttgaagctag 45369182  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 7087425 - 7087352
Alignment:
Q  187 tttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattggttataacttgaagctaggattt 260  Q
    ||||||||||||| ||| | |||| |  ||||||||||| || || |||||||| |||||||||||||| ||||    
T  7087425 tttgacatgtttgaatgttttcgagtagaattgattttgtttttagaattggttttaacttgaagctagaattt 7087352  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 13381965 - 13382005
Alignment:
Q  183 tgattttgacatgtttggatgatgtcgattgaaattgattt 223  Q
    |||||||||||||||||| |||| ||||||| |||||||||    
T  13381965 tgattttgacatgtttgggtgatatcgattggaattgattt 13382005  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 10898672 - 10898738
Alignment:
Q  185 attttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattggttataacttgaag 251  Q
    |||||||||||||||| || | |||| | ||||||||||||| |||| ||||| || ||||||||||    
T  10898672 attttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattctaacttgaag 10898738  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 47322043 - 47321967
Alignment:
Q  183 tgattttgacatgtttggatgatgtcgattgaaattgattttgcttctaaaattggttataacttgaagctaggattt 260  Q
    |||||||||||||||| | || |||||| |  |||||||| |||||||| ||||| |||| |||||||||||| ||||    
T  47322043 tgattttgacatgttttgttgttgtcgagtagaattgattctgcttctataattgattat-acttgaagctagaattt 47321967  T

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