View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10744_2 (Length: 559)
Name: NF10744_2
Description: NF10744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10744_2 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 40 - 376
Target Start/End: Original strand, 49040432 - 49040779
Alignment:
| Q |
40 |
atcaacaaataaattttaataataagaataaattttacgcttggcttactttttgagtatttttatgtaatttaaagtatggtttacatacaatatatat |
139 |
Q |
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| T |
49040432 |
atcaacaaataaattttaataataagaataaattttacgcttggcttactttttgagtatttttatgtaatggaaagtatggtttacatacaatatatat |
49040531 |
T |
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| Q |
140 |
a------gcaaccatggatattgtatattggnnnnnnnnnctcatgtctca-------tagataaaacttttggtaagagtttatatagaagacaatatc |
226 |
Q |
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| T |
49040532 |
atatatagcaaccatggatattgtatattggaaaaaaa--ctcatgtctcacatcggatagataagactcttgataagagtttatatagaggagaatatc |
49040629 |
T |
|
| Q |
227 |
ctcatcttaaaaaccgatttttaaatcatcaccttaaaaatggtttttacggataaccttcaatttcattactatatgctgaatagtatccgagtgtcaa |
326 |
Q |
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| T |
49040630 |
ctcatcttaaaaaccaatttttaaatcctcaccttaagaatggtttttaaggataaccttcaatttcattactatatgctgaatagtatccgagtgtcaa |
49040729 |
T |
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| Q |
327 |
atttatcccgaaaacacaaactaatacaagttatatatgtattagctata |
376 |
Q |
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| T |
49040730 |
atttatcatgaaatcacaaactaatacaagttatatatgtattagctata |
49040779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 413 - 483
Target Start/End: Original strand, 49040779 - 49040849
Alignment:
| Q |
413 |
aatttttatgatatagcaaatcctttgttatatctcaacaagatagtcgaagaacataaagtatatttctt |
483 |
Q |
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| T |
49040779 |
aatttttatgatatagcaaatcctttgttatatctcaacaagatagttgaagaacataaagtatatttctt |
49040849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 49040373 - 49040415
Alignment:
| Q |
1 |
tctgttaacaactaccctattcatttctcaaattttaaaatca |
43 |
Q |
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| T |
49040373 |
tctgttaacaactaccctattcatttctcaaattctaaaatca |
49040415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 8305038 - 8304972
Alignment:
| Q |
184 |
atagataaaacttttggtaagagtttatatagaagacaatatcctcatcttaaaaaccgatttttaa |
250 |
Q |
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| T |
8305038 |
atagataagacttttgataagagtttatatagaggagacaatcctcaccttatgaaccgatttttaa |
8304972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 19984734 - 19984702
Alignment:
| Q |
184 |
atagataaaacttttggtaagagtttatataga |
216 |
Q |
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| T |
19984734 |
atagataagacttttggtaagagtttatataga |
19984702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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