View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10744_3 (Length: 489)
Name: NF10744_3
Description: NF10744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10744_3 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 135 - 291
Target Start/End: Original strand, 1109017 - 1109169
Alignment:
| Q |
135 |
ctgtgaacgatggttcagacatatgaatgtgatctttgcagttcacaatgtgtctgaacagattgagatcaataatggcatggaaccccttcctgcagat |
234 |
Q |
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| T |
1109017 |
ctgtgaacgatggttcagacatatgaatgtgatctttgcagttcacaatgtgtctgaacagattgagatcaataatggcatggaaccccttcctgcagat |
1109116 |
T |
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| Q |
235 |
gctacggatcatgtgcagagaaatacgtataaggatgtgaagaggaaagcatatatt |
291 |
Q |
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| T |
1109117 |
gctacag---atgt-cagagaaatatgtataacgatgtgaagaagaaagcatatatt |
1109169 |
T |
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Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 8682744 - 8682828
Alignment:
| Q |
29 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggcacaaaagtagaggaagtgaagccagaaccaca |
113 |
Q |
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| T |
8682744 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggctcaaaagtagaggaagtgaagccagcaccaca |
8682828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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