View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10744_5 (Length: 435)
Name: NF10744_5
Description: NF10744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10744_5 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Complemental strand, 54363 - 53946
Alignment:
| Q |
11 |
cagagacatccacatatggagaagaattcccaacatggatttgcatttcaggtactttgagtgattccattttgatcacaattcctccatgagtttgtga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54363 |
cagagacatccacatatggagaagaattcccaacatggatttgcatttcaggtactttgagtgattccattttgatcacaattcctccatgagtttgtga |
54264 |
T |
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| Q |
111 |
ttgtccttgaagtgaatgtccatgtcctcttgctgcaacagtgagatgagagctatgtcccatatgccatatatgttttattgtggttgcaatatcagaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54263 |
ttgtccttgaagtgaatgtccatgtcctcttgctgcaacagtgagatgagagctatgtcccatatgccatatatgttttattgttgttgcaatatcagaa |
54164 |
T |
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| Q |
211 |
actgattttgggtacatcactgccattgaatgatattggtatctattgccaaaatcttttgatgctttgttaaggctagtttcatcaaaactcaaatgtc |
310 |
Q |
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| T |
54163 |
actgattttgggtacatcactgccattggatgatattggtatctattgccaaaatcttttgatgctttgttaaggctagtttcatcaaaactcaaatgtc |
54064 |
T |
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| Q |
311 |
cttctagtggaagtgtttttaatgaaaaagggatgttggaaagacaaaagttaaaccttgtggctatacaactaagaaacaagatcatgaatcctttgag |
410 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54063 |
cttctagtggaagtgtttttaatgaaaacgggttgttggaaagacaaaagttaaaccttgtggctatacaactaagaaacaagatcatgaatcctttgag |
53964 |
T |
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| Q |
411 |
gaatagaatgttttgttt |
428 |
Q |
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| T |
53963 |
gaatagaatgttttgttt |
53946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 14785367 - 14785784
Alignment:
| Q |
11 |
cagagacatccacatatggagaagaattcccaacatggatttgcatttcaggtactttgagtgattccattttgatcacaattcctccatgagtttgtga |
110 |
Q |
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| T |
14785367 |
cagagacatccacatatggagaagaattcccaacatggatttgcatttcaggtactttgagtgattccattttgatcacaattcctccatgagtttgtga |
14785466 |
T |
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| Q |
111 |
ttgtccttgaagtgaatgtccatgtcctcttgctgcaacagtgagatgagagctatgtcccatatgccatatatgttttattgtggttgcaatatcagaa |
210 |
Q |
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| T |
14785467 |
ttgtccttgaagtgaatgtccatgtcctcttgctgcaacagtgagatgagagctatgtcccatatgccatatatgttttattgttgttgcaatatcagaa |
14785566 |
T |
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| Q |
211 |
actgattttgggtacatcactgccattgaatgatattggtatctattgccaaaatcttttgatgctttgttaaggctagtttcatcaaaactcaaatgtc |
310 |
Q |
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| T |
14785567 |
actgattttgggtacatcactgccattggatgatattggtatctattgccaaaatcttttgatgctttgttaaggctagtttcatcaaaactcaaatgtc |
14785666 |
T |
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| Q |
311 |
cttctagtggaagtgtttttaatgaaaaagggatgttggaaagacaaaagttaaaccttgtggctatacaactaagaaacaagatcatgaatcctttgag |
410 |
Q |
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| T |
14785667 |
cttctagtggaagtgtttttaatgaaaacgggttgttggaaagacaaaagttaaaccttgtggctatacaactaagaaacaagatcatgaatcctttgag |
14785766 |
T |
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| Q |
411 |
gaatagaatgttttgttt |
428 |
Q |
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| T |
14785767 |
gaatagaatgttttgttt |
14785784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 70 - 422
Target Start/End: Original strand, 13415560 - 13415912
Alignment:
| Q |
70 |
agtgattccattttgatcacaattcctccatgagtttgtgattgtccttgaagtgaatgtccatgtcctcttgctgcaacagtgagatgagagctatgtc |
169 |
Q |
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| T |
13415560 |
agtgattccatattgatcacaactccctcttcagcttgtgcttgcccttgaagtgagtggccatgtcctctagctgcaacagttaggtgagaacttggac |
13415659 |
T |
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| Q |
170 |
ccatatgccatatatgttttattgtggttgcaatatcagaaactgattttgggtacatcactgccattgaatgatattggtatctattgccaaaatcttt |
269 |
Q |
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| T |
13415660 |
ctaaattccatatatgctttatagtaactgcaatatcagaaactgattttggatgtagtactgtcataggatgagattggtacctgttgccaaaatcttt |
13415759 |
T |
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| Q |
270 |
tgatgctttgttaaggctagtttcatcaaaactcaaatgtccttctagtggaagtgtttttaatgaaaaagggatgttggaaagacaaaagttaaacctt |
369 |
Q |
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| T |
13415760 |
agctgcattttttaggtcaagttcatcaaaactaaagtgtccttctaaaggaagtgttttcaaggaaaaagggatgcttgaaatacaaaaattaagtcta |
13415859 |
T |
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| Q |
370 |
gtggctatacaactaagaaacaagatcatgaatcctttgaggaatagaatgtt |
422 |
Q |
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||| |||||||||||| || || |||||||| ||||| | |||||||||||| |
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| T |
13415860 |
atggttatacaactaaggaataaaatcatgaagccttttatgaatagaatgtt |
13415912 |
T |
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