View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10744_6 (Length: 431)
Name: NF10744_6
Description: NF10744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10744_6 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 26518479 - 26518064
Alignment:
| Q |
19 |
cagatgcatgatgcatcacgtgtaattcgaggaaaaacttttgtcacccaatcatttcccgtcacgtttatgtagtattgattgattattgtttttctat |
118 |
Q |
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| T |
26518479 |
cagatgcatgatgcatcacgtgtaattcgaggaaaaacttttgccacccaatcatttcccgtcacgtttatgtagtattgattgattattgtttttctat |
26518380 |
T |
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| Q |
119 |
tacttatata----------ccaagctcaagattttatgggacaagcttattgttaattggccttattaacagtaaattaggtggacatatatcatcatg |
208 |
Q |
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| T |
26518379 |
tacttatatatacttatataccaagctcaagattttatgggacaagcttattgttaattggccttattaacagtaaattatgtgggcatatatcatcatg |
26518280 |
T |
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| Q |
209 |
agttgaggcaaaagagacctaagaagaattgaagttatataaatttcatatttgtttatgatcaaggttggttaaggatacagcagaccaacctaaaatt |
308 |
Q |
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| T |
26518279 |
agttgaggcaaaagagacctaagaagaattgaagttatataaatttcatatttgtttatgatcaaggttggttaaggatcaagcagaccaacctaaaatt |
26518180 |
T |
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| Q |
309 |
ttagacca-aaaatttgtagccgaataaagca-tat--tttaatttttgatttagttataattatata----ataaattttctaaaagatgtcggttcat |
400 |
Q |
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| T |
26518179 |
ttagaccacaaaatttgtagccgaataaagcattattatttttttttttatttagttataattatataattgataaattttctaaaagatgtcggttcat |
26518080 |
T |
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| Q |
401 |
tagttagagtttgacc |
416 |
Q |
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| T |
26518079 |
tagttagagtttgacc |
26518064 |
T |
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