View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10744_7 (Length: 411)
Name: NF10744_7
Description: NF10744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10744_7 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 33152851 - 33152450
Alignment:
| Q |
12 |
aataaaaagcatccaagaccaagagatgtagtgcaactattggagaat------agctcttaggaggagcaaacatatcgaaaccaagttaataaaggaa |
105 |
Q |
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| T |
33152851 |
aataaaaagcatccaagaccaagagatgtagtgcaactattggagaattactatagctcttaggaggagcaaacatatcgaaaccaagttaataaaggaa |
33152752 |
T |
|
| Q |
106 |
gaatagaactagtgttttgcagttctgaggatcaattagctgacattaagactaaatcgtagaagatagaaaaattagaagagatnnnnnnnnn-cattc |
204 |
Q |
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| T |
33152751 |
gaatagaactagtgttttgcagttctgaggatcaattagctgacattaagactaaatcgtagaagatagaaaaattagaagagataaaaaaaaaacattc |
33152652 |
T |
|
| Q |
205 |
ttaaatgtagtttcattagtagagaaatagaattaagaagtgtgttgaaattgaaagcgtgcttcaacttctgttatagtagtttagagagttacttaca |
304 |
Q |
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| T |
33152651 |
ttaaatgtagtttcattagtagagaaatagaattaagaagtgtgttgaaattgaaagcgtgcttcaacttctgttatagtagtttagagagttacttaca |
33152552 |
T |
|
| Q |
305 |
tagcaagtaatatggctagttagtatataatgtgtgtttacacacaataagttagaaagtcataaaatactaactacccgtattacttactatgcaagta |
404 |
Q |
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| T |
33152551 |
tagcaagtaatatggctagttagtatataatgtgtgtttacacacaataagttagaaagtcataaaatactaactacccgtattacttgctatgcaagta |
33152452 |
T |
|
| Q |
405 |
ac |
406 |
Q |
| |
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|| |
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| T |
33152451 |
ac |
33152450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 33152437 - 33152485
Alignment:
| Q |
283 |
gtagtttagag-agttacttacatagcaagtaatatggctagttagtat |
330 |
Q |
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| T |
33152437 |
gtagtttagagcagttacttgcatagcaagtaatacgggtagttagtat |
33152485 |
T |
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