View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10744_9 (Length: 347)
Name: NF10744_9
Description: NF10744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10744_9 |
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| [»] chr8 (4 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 36964424 - 36964089
Alignment:
| Q |
11 |
agaatatggaaagagttggttcaaggacacacattgcagtgacaatgtggaggagcagagaacatgaaagtgacgacaaccatgaagacaaagtattggg |
110 |
Q |
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| T |
36964424 |
agaagatggaaacagctggttcaaggacaaacattgcagtgacattgaag-ggagcatagaacatgaaagtgatgacaaccatgaagacaaagtattggg |
36964326 |
T |
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| Q |
111 |
aatggaaataaatccattatacataagcatggcaatgggattttcaactggattttgggtatcttggggctcattaatactcattgcatcttggagacat |
210 |
Q |
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| T |
36964325 |
aatggaaataaatccattatacataagcatggctatgggattttcaactggattttgggtattttggggctcattaatactcattgcatcttggcgacat |
36964226 |
T |
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| Q |
211 |
gcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataaactgcggacgaagcttcgcactcaacaatctc |
310 |
Q |
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| T |
36964225 |
gcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataaactgcagaggaagcttcacactcaacaacctc |
36964126 |
T |
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| Q |
311 |
ccatgtaatcaaactctttgtttgctctgttaatgtc |
347 |
Q |
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| T |
36964125 |
ccatgtaatcaagctctttgtttgctctgttattgtc |
36964089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 342
Target Start/End: Complemental strand, 36976209 - 36975879
Alignment:
| Q |
11 |
agaatatggaaagagttggttcaaggacacacattgcagtgacaatgtggaggagcagagaacatgaaagtgacgacaaccatgaagacaaagtattggg |
110 |
Q |
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| T |
36976209 |
agaagatggaaacagttggttcaaggacacacattgcagtgacattgaag-ggagcatagaacatgaaagtgacgacaaccatgaagacaaagtattggg |
36976111 |
T |
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| Q |
111 |
aatggaaataaatccattatacataagcatggcaatgggattttcaactggattttgggtatcttggggctcattaatactcattgcatcttggagacat |
210 |
Q |
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| T |
36976110 |
aatggaaataaatccattctacataagcatggcaatgggattttcaactggattttgggtattttggggctcattaatactcattgcatcttggaggcat |
36976011 |
T |
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| Q |
211 |
gcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataaactgcggacgaagcttcgcactcaacaatctc |
310 |
Q |
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| T |
36976010 |
gcttatttccgttttctaggcaacatgaatgataagatctatgtcactgtagttgtcgcacttaataaattgcggaagaagtttcacactcaacaacctc |
36975911 |
T |
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| Q |
311 |
ccatgtaatcaaactctttgtttgctctgtta |
342 |
Q |
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| T |
36975910 |
ccatgtaaccaaactctttgtttgctctgtta |
36975879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 151 - 342
Target Start/End: Complemental strand, 36970019 - 36969829
Alignment:
| Q |
151 |
ttttcaactggattttgggtatcttggggctcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatct |
250 |
Q |
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| T |
36970019 |
ttttcaactgcattttgggtattttggggatctttaatactcattgcatcttggagacatgcttatttctgttttctaagcaacatgaacgataagatct |
36969920 |
T |
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| Q |
251 |
atgtcactgtcgttgtcacacttaataaactgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgtta |
342 |
Q |
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| T |
36969919 |
atgtcactgttgttgtcacgtttaataaattgcggaggaagtttcacactcaacaacct-ccatgtaaccaaactctgtatttgctctgtta |
36969829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 125 - 256
Target Start/End: Complemental strand, 36973361 - 36973230
Alignment:
| Q |
125 |
cattatacataagcatggcaatgggattttcaactggattttgggtatcttggggctcattaatactcattgcatcttggagacatgcttatttccgttt |
224 |
Q |
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| T |
36973361 |
cattctacataagcattgctatggggttttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttt |
36973262 |
T |
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| Q |
225 |
tctaagcaacttgaatgataagatctatgtca |
256 |
Q |
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| T |
36973261 |
tctaagcaacatgaatgataggatctaagtca |
36973230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 69 - 347
Target Start/End: Original strand, 5868950 - 5869228
Alignment:
| Q |
69 |
agaacatgaaagtgacgacaaccatgaagacaaagtattgggaatggaaataaatccattatacataagcatggcaatgggattttcaactggattttgg |
168 |
Q |
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||||||||||| ||||| |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
5868950 |
agaacatgaaaatgacggcaaccatggagacaaggtattggggatggaaataaatccattatacataagcatggctatggggttttcaactggattttgg |
5869049 |
T |
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| Q |
169 |
gtatcttggggctcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtca |
268 |
Q |
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| T |
5869050 |
gtattttggggatctttaatactcattgcatcttggagacatgcttatttccgttttataagcaacatgaatgataagatccatgtcactgtagttgtcg |
5869149 |
T |
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| Q |
269 |
cacttaataaactgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtc |
347 |
Q |
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| T |
5869150 |
cacttaataaactgcggaggaagtttcacactcaacaacctcccatgtaaccaaactctttgtttgctctgttattgtc |
5869228 |
T |
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